RNA id: TU210680


Basic Information

Item Value
RNA id TU210680
length 200
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G142606
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 27454693 ~ 27454892 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ataattttatttttctaatgcTCTAATGTTCATAAGGCCATCTGAATATTTCTTGTATTTATCatactgaaatcattttatatcCTCGGCATGATGCCCACCGCGGTCAACAAGTTATTTTCAAGACAACcaagtaaaaatgaaagaaaaaatattatttgcgTGTAAAAGTTTGGCAGCACAGAAAAACTAAGAAATCG

Function

GO: NA

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210652 lncRNA downstream 3472 27446476 ~ 27451221 (-) True G142586
TU210596 lncRNA downstream 77166 27375209 ~ 27377527 (-) True G142540
TU210583 lncRNA downstream 120977 27333297 ~ 27333716 (-) True G142529
TU210565 lncRNA downstream 155817 27215632 ~ 27298876 (-) True G142515
TU210660 lncRNA upstream 16892 27471784 ~ 27474801 (-) True G142590
TU210693 lncRNA upstream 20718 27475610 ~ 27476044 (-) True G142614
TU210694 lncRNA upstream 21202 27476094 ~ 27477776 (-) False tex55
XM_043218750.1 mRNA downstream 36273 27409502 ~ 27418420 (-) True zgc:175280
XM_043219716.1 mRNA downstream 50298 27387290 ~ 27404395 (-) True zgc:152816
XM_043219717.1 mRNA downstream 52708 27387290 ~ 27401985 (-) False zgc:152816
XM_043220005.1 mRNA downstream 115606 27336495 ~ 27339087 (-) True mtif3
XM_043219811.1 mRNA upstream 21208 27476100 ~ 27478227 (-) True tex55
XM_043220385.1 mRNA upstream 118971 27573863 ~ 27577372 (-) True LOC122325363
XM_043219944.1 mRNA upstream 130739 27585631 ~ 27602190 (-) True LOC122325076
TU210568 other downstream 198435 27229803 ~ 27256258 (-) False LOC122325335
TU210476 other downstream 529706 26922815 ~ 26924987 (-) True G142444
unassigned_transcript_2516 other downstream 839963 26614643 ~ 26614730 (-) True trnas-gcu_32
TU210168 other downstream 1220448 26232024 ~ 26234245 (-) True G142278
TU210175 other downstream 1266774 26185660 ~ 26187919 (-) True G142281

Expression Profile