RNA id: TU252233


Basic Information

Item Value
RNA id TU252233
length 2424
lncRNA type sense_over
GC content 0.42
exon number 2
gene id G170304
representative True

Chromosome Information

Item Value
chromosome id NW_025047681.1
NCBI id JAEQBD010000026.1
chromosome length 5200000
location 409504 ~ 720610 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tccatttgcagacttttattgagcaaaggcatggtcaaagcagacAGGCGTCAAAACGCAGCAAACAGGAGTGTAAGAggcaaggcaataacaaaatccaaaaacaggcggAGGTCGGGTCAGGtagcaaacaatcacagtatcagaagacaggcagggTCAAAACGCAGCAAACAGGAGTGTAAGAggcaaggcaataacaaaatccaaaaacaggcggAGGTCGGGTCAGGtagcaaacaatcacagtatcagaagacaggcagggtcaaaaccaaagaatctaagaCTCGGGAAACAACAATCAAACGACAATCCAACAATAGTACAATggaacctgcaggtgaggggcctacaACAGTATTTATAGAGTTTTAACAggagtagcagcagaggagtgatcacagatcacccagaggtaagagccctctgctggcttggtgacactttgaaatatgtatgtacagtTACTCTTTCCTATATTTATGGGAACCAAATTCCAAGGACCAGAACCTCgataaaacacagtttttttcatcaaattattttgtggatacagtaaaataatgtcATCCTTACTCGCTTGATGTGTTTTAGAATCATGTCTAAGTCACACATTAACAagttttattaaagaataaacAAGGCGTATGATACTTCAATAccttatgaataaatactaacgatcataaatttaatttaaccttcAACTGCAGCCATGACAACTTTCACTAGCATTGACCGGAAGGGATAATGAAGCACTAGCCTGGCTGTTCTGTTCTGAACCatctaaagtattttttaatggtttctcAAATGCACTTAATTATACAATAGGCAAGTACTCAAGATGTAATCAAACTAATTAATGtaccacattttttaaaagtgtgaatGAAAGGTTGAATTCATTAAACATCCGTTCCTGTCTTCACCCCTGGATCCTGTCTGCCCCGCTGTTCACCCTCAGTCCGCCATTAGTGTGCTGGATCTGCCActggtctgccagtctccatcagCCTCTGCCTTGACACCTATATTATATCTTCATATATGAATTAATGACATTGTAGTATATTATTACACCACTCAAATATGCTGTCAGTGCTTGTTTAGTTTATATTGACCTTTATAAAATGGGAAAAGTGGCCTGCATGAAAGGGCTTAACTAGAACAAAAATAGTTGATTACTAGACAATCATTTCATGAGAGTGGCATAATCCAGTAAAATATGTTCTTTAAGGTGTGCAGGTCAAATTTACCCGCTTTTTACCTGGTTTTAGAAATATATTGACCCCTCttgatgttttgtttacttCCTTGTTACCTTTAATTCCCACATGTTGTCACACAATCTCAGGTACAATGGAACAATGATGATCATTTATTGGAACAGAGAACTGAAATAGGCGATGGCTAAGAATTTAGCTGAGTGTATAGTGTATGTCCACAGGAAACGGTGTCCACAATCTACAGAGCATAGAGGGTCAAGGGTAGTAAAGGGGTGTGAATGGTAGATCTTACGAAGCGCAACTGAGGGAGTGTGGTATTTTAGGAGTGTCTCTAATGAGCAACATGTGAGGGTGATTAGTATTGTGGGGATGATGATCTGGTGGGTGGTGCTTCAGAGGGAGGTGACTGTGGTGAATGCCTGACATTACCCCCTCCTCCATAGGTCTTTCCTTCTGGACATTCTGACGGTGCTGGCTCCTGGAGGGTTGCTTGTTGGATCTGTTGATCTAATTCCCTTATGATGGGGCTGACAATGAGAGTGTCGGGAATGATGGGTTCCAGTTTGTTGGATGAATCAGTAGTATATTGGCGTGAAAGTGCATCTGCAGGAATGTTCTTGGATCCGGGTCGATAAGTAATCTTGAAGTTGATGTGTGTTAGAAAAAGAGCCCAGCGTGCTTGATGGAGATTGAGTCTCTTAGCCTCACGGATGTATTGCAGATTCTTGTGGTAAGTAATGATCCTGAATGGATGAATGGCACCCTCCAGGCAGTGTTGCCACTCCCCCAGGGCTAATTTGATGGCCAACAGGTTTCCCACATCATAGTTTTGCTCTGCCGGTGACAGCTTGTGGGAATAAAAGGCACAGGGATGGAGGAGCGAGGAATCATCAGCCGCTTGGGAAAGCAAAAGGTCTTCTTTAGATAGAGGAAAGCTTCGTGGGCAGAGGGGCACCAAGTCAGGTGTTTCGGTTTGCACCTCAGAAGGGAAGTCATCAGGGCAGTGATAGAACTGTAGTTCTTGATGAAACGATGGTAGAAGTTAGCAAAACCTAAAAAGCGTTGGAACTCCTTGATTTTGATGGGTTCTGGCCATTTGAGGACTGCATCGACCTTCCCTTTGTCTATTTGCACACTCTCGACACTCATGTTGTATCCAAAGAATTGAAAAGATGATTTATGGAACTCCCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006248266.1 lncRNA upstream 131098 276735 ~ 278406 (+) True LOC122331685
XR_006248265.1 lncRNA upstream 142373 265461 ~ 267131 (+) True LOC122331684
XR_006248269.1 lncRNA upstream 176824 232167 ~ 232680 (+) True LOC122331688
TU252129 lncRNA upstream 213459 16679 ~ 196045 (+) True G170237
TU252283 lncRNA downstream 72027 792637 ~ 796787 (+) True LOC122331504
TU252291 lncRNA downstream 138646 859256 ~ 873811 (+) True G170339
XR_006248190.1 lncRNA downstream 406230 1126840 ~ 1130268 (+) False LOC122331487
TU252315 lncRNA downstream 406314 1126924 ~ 1130273 (+) True LOC122331487
TU252388 lncRNA downstream 427249 1147859 ~ 1148205 (+) True G170410
XM_043229184.1 mRNA upstream 139506 268643 ~ 269998 (+) True LOC122331679
XM_043228902.1 mRNA upstream 140842 267169 ~ 268662 (+) True LOC122331441
XM_043229185.1 mRNA upstream 150981 254047 ~ 258523 (+) True LOC122331680
XM_043229186.1 mRNA upstream 157059 250348 ~ 252445 (+) True LOC122331682
XM_043229177.1 mRNA upstream 168977 223344 ~ 240527 (+) True LOC122331674
XM_043228907.1 mRNA downstream 32425 753035 ~ 765747 (+) True LOC122331454
XM_043228937.1 mRNA downstream 72027 792637 ~ 799271 (+) False LOC122331504
XM_043228934.1 mRNA downstream 291700 1012310 ~ 1013908 (+) True LOC122331500
XM_043228910.1 mRNA downstream 334476 1055086 ~ 1059050 (+) True LOC122331460
XM_043229205.1 mRNA downstream 364378 1084988 ~ 1092383 (+) True LOC122331707
TU252137 other upstream 350159 41422 ~ 59345 (+) False LOC122331690
TU252301 other downstream 328482 1049092 ~ 1059017 (+) False LOC122331460
TU252300 other downstream 334475 1055085 ~ 1059017 (+) False LOC122331460
TU252312 other downstream 384467 1105077 ~ 1105891 (+) True G170357
TU252416 other downstream 631066 1351676 ~ 1352642 (+) True G170431
TU252423 other downstream 743455 1464065 ~ 1510057 (+) True G170438

Expression Profile