RNA id: TU61753


Basic Information

Item Value
RNA id TU61753
length 306
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G41754
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 1559719 ~ 1560024 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAACAGAGGAAGGGAGTGAGAAGACACGTCGTGTTCAGACACCTGTTAACAGACCGTACTTTATACGCTGGCACTGCAATGCATTTCATTCACGCTCCAGAAAGAAAAGGGAGGACAAAAGACGGGAtctttattaaaagcataataACGTTGAACACCTCTAATGCCTTCGTGGTGGGGGGCAATACAACGTTAAATGCAAAAAGTGTGATTAACTGACAAGTAAACGATCAAATATGTATGGAGTTGCTAACATGCAAAAGTTgtgtaattgaaaaaaaaacaatgaacaaaaatatggtCCAT

Function

GO:

id name namespace
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0005929 cilium cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61566 lncRNA downstream 121590 1434973 ~ 1438129 (-) True G41617
TU61562 lncRNA downstream 127785 1425568 ~ 1431934 (-) True G41615
TU61521 lncRNA downstream 454186 1104999 ~ 1105533 (-) True G41587
TU61517 lncRNA downstream 475542 1083798 ~ 1084177 (-) True G41583
TU61516 lncRNA downstream 476571 1082759 ~ 1083148 (-) True G41582
TU61756 lncRNA upstream 28039 1588063 ~ 1640067 (-) True G41757
TU61775 lncRNA upstream 75079 1635103 ~ 1716301 (-) True LOC122347396
TU61776 lncRNA upstream 106084 1666108 ~ 1716341 (-) False LOC122347396
TU61785 lncRNA upstream 127096 1687120 ~ 1693349 (-) True G41774
TU61802 lncRNA upstream 151086 1711110 ~ 1711540 (-) True G41784
XM_043241837.1 mRNA downstream 15692 1542306 ~ 1544027 (-) True LOC122346936
XM_043241835.1 mRNA downstream 17553 1536450 ~ 1542166 (-) False lrrc41
XM_043241834.1 mRNA downstream 17553 1536450 ~ 1542166 (-) True lrrc41
XM_043241312.1 mRNA downstream 613406 940290 ~ 946313 (-) True hyi
XM_043241262.1 mRNA downstream 702245 855707 ~ 857474 (-) True med8
XM_043241270.1 mRNA upstream 803 1560827 ~ 1566465 (-) True dmbx1b
XM_043242623.1 mRNA upstream 156705 1716729 ~ 1731431 (-) False tlk1b
XM_043242622.1 mRNA upstream 156705 1716729 ~ 1731431 (-) True tlk1b
XM_043242624.1 mRNA upstream 156705 1716729 ~ 1731240 (-) False tlk1b
XM_043242625.1 mRNA upstream 195277 1755301 ~ 1764530 (-) True slc25a12
TU61311 other downstream 1146166 225710 ~ 413553 (-) True G41443
TU61336 other downstream 1384524 173968 ~ 175195 (-) False LOC122346743
TU61334 other downstream 1395662 163323 ~ 164057 (-) False LOC122346743
TU61792 other upstream 142809 1702833 ~ 1707408 (-) True G41781
TU62012 other upstream 1280638 2840662 ~ 2843258 (-) True G41955
XR_006251230.1 other upstream 1532516 3092540 ~ 3107897 (-) False cep170ab
XR_006251231.1 other upstream 1534766 3094790 ~ 3107897 (-) False cep170ab
XR_006251245.1 other upstream 2084242 3644266 ~ 3644404 (-) True LOC122347626

Expression Profile