RNA id: TU63298



Basic Information


Item Value
RNA id TU63298
length 1151
RNA type TUCP
GC content 0.39
exon number 4
gene id LOC122347558
representative False

Chromosome Information


Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 4818191 ~ 4825466 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CTCGCGCCTGTAAAATGAAGTGACCTTTCTTTTTCGTCCTGATACAGAATCGGTTCGCCGACCGGCACGAACAGAGTCACGCATCCCGCAAGATTACGAGCTTTCTCAAACAGCCTGAAAGGTAAATATGGGTGACGTTGAAAAGGGAAAGAAGATTTTCGTCCAGAAGTGCGCCCAGTGCCACACAGTTGAAAACGGAGGCAAGCACAAAGTGGGGCCAAATCTTTGGGGTCTTTTTGGACGCAAGACTGGCCAGGCAGAGGGATTTTCCTACACAGATGCCAATAAGAGCAAAGGCATTGTCTGGGGTGAGGACACCTTGATGGAATATTTGGAGAATCCCAAGAAATACATTCCAGGCACAAAGATGATCTTTGCTGGGATCAAGAAGAAGGGCGAGAGGACAGACCTTATTGCATACTTAAAGGCATCCACATCCTAATACAGTTGGAGAGCGAGGAGActgcaatatttaaattaattgttggTAGTTTGGCTTTGAATGTCTttaacgatatatatatatattcgaaCGGTGTGACAGATCAAGTGGCCAGGGTTAGGCTATTCATTATAACATGTGGCATGCTTCTAATGCCGGTCCATTTTAGCAGTGAAGAGTTCCAGCTCTTTGTTTGTCCAAGTAATGTAGAAATGAGTCAAGTTACTGCAGATCCCCAGCGTATCCACTGAGGGAATAAAATCTGTGTCCCCTGGTTTCACAGGCGCTATTGtacattaaatttattaaattgtacTGAACCTTTGAAGTATTTGGATCACAATAAGAGACTGAACAAGCAGCATGCTTATTGGTAACTAACTGTATCCGATGGATTTGATCTGTCAAATAAAATTGTGGAAACCGTGCaaaaaaaaaaaaaaaaaaaaaaatcacaggttccagaaaatattaagcagcacaacagtttcaacactgataataaatcagcatgtaaaaaatgatttctaaaggatcatgtgacactgaagacaggagtaatggctgatgaaaattcaacACTGCATctcagaatgcatttttattaaatataaaaatatatttatataggacattacattatatagaatattacaaaatgtaataatatttctttttgatcaaatatgtaCAGCCTTGATGAGCGTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU63120 lncRNA downstream 95569 4722036 ~ 4722622 (-) False dnah9l
TU63118 lncRNA downstream 98266 4719185 ~ 4719925 (-) False dnah9l
TU63117 lncRNA downstream 103417 4713681 ~ 4714774 (-) False dnah9l
TU63111 lncRNA downstream 113688 4698903 ~ 4704503 (-) True G42644
TU63045 lncRNA downstream 312524 4503734 ~ 4505667 (-) True G42614
TU63308 lncRNA upstream 41690 4867127 ~ 4881387 (-) False LOC122346990
TU63306 lncRNA upstream 45690 4871127 ~ 4881387 (-) True LOC122346990
XR_006251189.1 lncRNA upstream 45809 4871246 ~ 4881393 (-) False LOC122346990
TU63300 lncRNA upstream 57350 4882787 ~ 4886316 (-) True sumo3a
TU63621 lncRNA upstream 308365 5133802 ~ 5228971 (-) True G42955
XM_043241568.1 mRNA downstream 14319 4796718 ~ 4803872 (-) False lnpk
XM_043241570.1 mRNA downstream 14341 4796718 ~ 4803850 (-) False lnpk
XM_043241572.1 mRNA downstream 14410 4796718 ~ 4803781 (-) False lnpk
XM_043241567.1 mRNA downstream 14412 4796718 ~ 4803779 (-) True lnpk
XM_043241573.1 mRNA downstream 14416 4796718 ~ 4803775 (-) False lnpk
XM_043241090.1 mRNA upstream 3998 4829435 ~ 4831964 (-) True ccr7
XM_043241302.1 mRNA upstream 9530 4834967 ~ 4841155 (-) True notum2
XM_043241272.1 mRNA upstream 23441 4848878 ~ 4850924 (-) True coq7
XM_043241940.1 mRNA upstream 57813 4883250 ~ 4886349 (-) False sumo3a
XM_043241939.1 mRNA upstream 62102 4887539 ~ 4891669 (-) True pttg1ipa
XR_006251220.1 other downstream 43645 4768805 ~ 4774546 (-) False gpr155b
XR_006251142.1 other downstream 402978 4394407 ~ 4415213 (-) False cdk15
XR_006251246.1 other downstream 449947 4368161 ~ 4368244 (-) True LOC122347627
unassigned_transcript_1084 other downstream 818499 3999611 ~ 3999692 (-) True trnas-cga_4
TU62650 other downstream 856649 3958367 ~ 3961542 (-) True G42351
unassigned_transcript_1085 other upstream 130109 4955546 ~ 4955618 (-) True trnak-uuu_105
TU63628 other upstream 404019 5229456 ~ 5230710 (-) True G42958
XR_006251179.1 other upstream 797249 5622686 ~ 5639925 (-) False adam23a
XR_006251223.1 other upstream 866044 5691481 ~ 5699650 (-) True arl6ip6
TU63795 other upstream 905781 5731218 ~ 5736620 (-) False mylkb

Expression Profile