RNA id: XM_043241884.1


Basic Information

Item Value
RNA id XM_043241884.1
length 3354
RNA type mRNA
GC content 0.45
exon number 10
gene id slc25a38b
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 3647049 ~ 3656920 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTATGGCTTATGCTGGATTGAGAGGTGACTGTTAGCTTTACCGGCTAACTGACAGAAATCAGCTGACCTGTATTGCGCCACTTTATTTCCAATATATTCCAGTGTGTTTATTCTCAGCTTTGTATTTTATGAAGAAAATTGTATAGGAGCAGTTGCTGTGGGTAAAGTGACAGAAAGAGCAAGAATCATGATGAAGATCAGTCCTCATTCGCTCTTCCTCTTCGGTCCTTAACAGACagTCTGGATTCAAAGCTTTGACGTCTAACACATCACAACGGCCATAGAAGAGATAAAAGGGAGGGAGTTGAGCTCTTCCTCTGTACAAACTTCATCATCCTCTCCATCTGCAATGGAGATTGCCCTGCGGCAACAgaaagagtgagtgagagagagagagagatgcaagAGAAAAAGGACCCTCAGCCCAAATCTGCCAGCAGCCTGGGAAAGGCTCATCCTGCCCTGAAGGCCTTCATGTGCGGCTCTCTCAGCGGCACCTGCTCCACTCTGCTGTTCCAGCCATTGGATCTGGTGAAGACCAGACTGCAGACCCTGCAGAACAACATGCACCCAGGAGCTCCTAAAGTAGGGATGATTACAGTCTTTTTCAACGTGATTCGTACAGAGAAGCTGCTTGGCCTGTGGAAGGGGGTTTCACCGTCGTTCATGCGCTGTATCCCTGGCGTAGGGATCTACTTCAGCACATTTTACTCGCTGAAGCAGCACTTCTTCCTGGATAGGTCTCCAAGTGCTGGGGAGGCGGTGTTTCTAGGGGCTGGGGCTCGTTGTGTGGCAGGCGTCACCATGCTGCCCATCACAGTCATTAAGACTCGTTTTGAGAGCGGGCGGTACAATTACATAAGCGTAGCTGGAGCCCTTAAAAGTGTGTGTCAGAATGAAGGTCCCAGGGCTCTTTACTCCGGGCTCACAGCGACTCTGCTCAGAGACGCCCCGTTCTCTGGCATCTATGTCATGTTTTACAGCCAGGCCAAAAAGGCTTTGCCACAGGAGATCAGCTCGTCCTCTTTTGTTCCACTGGTTAACTTTGGCTGTGGTGTGGTGGCTGGGATATTGGCCTCTCTGGCCACTCAGCCAGCAGACGTGATCAAAACCCACATGCAAGTGAGCCCAATGTTGTATCCCAAGACCAGCGATGCTGTACGCCACGTCTATTTGAAGCATGGCTTGAGCGGGTTCTTTCGAGGAGCGCTTCCTCGTTCTCTGAGGCGAACCCTCATGGCGGCCATGGCCTGGACTGTGTACGAGCAGCTGATGGCTCGCATGGGACTGAAGTCCTAAAGACACCCAGCGCACTGAAGTGTGGACTTCATTCTGTTTGTGTCCATTAGAGGAGTGTGTGCTTTTCAGACGATGGTGAAAAGATGGCGTTCTGTTATCCTCGACGGCTTGATTGAAACAAAAGCAGCTAGTGTTGGCTGAGGTACTGATAATCGTAGggttgcgtgtgtgtgtgtgtgtgtgttagtgttttCAGGTGCAGTGAGTCGTTACCCCGTGACACCTCTTGACAGTGACATTCCTAAATTGCCACATTGTGAGTTTGTCTGCCTTGTTGACGTCTGCGTATTGAGACGGGTCTGCACTGAAGAATACCAATGAGAGACTGCTGAATCATGTGCCGTCAGCTCACAAGAAAACACTCCTTTCACAGGAAGAAAATCCCTCTTTTGGCAACTAACCTTAGAATACCACATGTCTCAGTGTCGTTGAAAAGTGCCCACCTTTGCAGCGTTCTCAGAAACCCACGACTCGGTGGACTCCAGTGTCTGATACAGTTCTTAAGCCTGGTCCTCCGAGTTAAATCCTTAGTGGAGGATGAGGCTTAGTGGGTGTCTAATACTGGTCTTACAAAGACATGTTGACATAATACTCCAGCGCTTCGACAATCAGACCGAATTACTCCAGGGCTGAGAAACTGAACTGACAACACATGACTGTCTCGCCAACATACTCCGTTCCGACTATAATTGCGTGTCTCTATGCGATGATTTGTGCTGTTCTACTGATTTCCTGTGCTGTATGACTGGACGGATTTATCAGTGCATTCCAGTtcactggcttttttttttttattttctcgaACGCTCGCTCCTGGGCACGGAATTTGGGTTGAATGAGACTTCGTAAGATGTggagaaacatttaatatttattaaagaaacgGGGGAGAACAAGTGTTAGAGTTCTCGAGAAAACGATGTGGAGTGGAACGCGTCCGTGAGAATGCTCCGTTTGTCGTATTTGCAAATGTGTCGTCGGGTCATTTTGATCGACGTGTTGTCGTGTTGACGTCGTGTGTGTGAAACCGCTGTAAGACGCCATAGTGTGGTGCTCGGTGTGAACACAACAGTGTAAAGTTCATTTTAAGTCTGCCAAAAACATGCCCTGGTTGTTCACCCTTAAAatctgtaaagaaaataaagcattgtgacattattttcattccAGTTAGGTAGCCAGTTAATTCCACCATTGTTGTCTTACTCGAATAAAACCTTTAATGattctaatataaaaaatgataagaaaattCAGGGATGCATTACATGTGGGAAATGCTTAATTTTCTTAGAAATAATGTCACGGTGCAAAAATCCTAATTGATCTGaaatagattttgttttaaCCTTGATAgaatttcttttagtttttttttcccctcttgaAATTTTAGTGGATGTTGAAATCATGTGGACACGTTTTCATAAAATTCACCCCTTAAGCCTTTGGGTTTCTTGTTCTCTCAGTTGTCTTGGTGATTTGCCACTTCATATACCGCTCAGTGTCCCATAGGACTGGTCAGCACCGCAGGAATCATTATTACCACATAGGTCAAActttgatcatttaaatgatatacTCGAGTGATTATTCTTTGACTTAGTTTGCTAAATTCAATTACATTAACAATTTGTTTTAACTTGCCTTGATTAAAATTAGATTGGCCTCTTCCTGACACAGCAAGATTATCTGCTGCAGAATGCCGTTGAATGCCCATTTTATGAAATGGGGAAGACACGCGGAGCCGAGTAACACTAGAAGTCACGCTACACACTACACGGATATATTTTGTGAAAGCACTTTAAATTCAGTGAAGTTGACTGCATTCAAGCTGAATCTGGGTGGTGTGTTTTGGTCACATGTTGCTGTGTAAGCCATTGTGCTTTGTGCTGTACTGTGGAGATGCTCTCTTGCCTTCACACAATCAGTATTGTCTCTTCAGCATTTCTTATGGCCATTGTTGTTGATATTTTGTCTGTACGTGAGAATATTTGCACATGCAAATGTCGTGCCTATGTTAATATGTGAATAAATCTGCCCTGTTTTTACAA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0020027 hemoglobin metabolic process biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62477 lncRNA downstream 108431 3535499 ~ 3538618 (-) True G42235
TU62506 lncRNA downstream 155788 3490922 ~ 3491261 (-) True G42254
TU62204 lncRNA downstream 357066 3288891 ~ 3289983 (-) True G42080
XR_006251127.1 lncRNA downstream 460492 3185231 ~ 3186557 (-) True LOC122346399
TU62122 lncRNA downstream 606011 3040345 ~ 3041038 (-) False G42042
TU62578 lncRNA upstream 129156 3785899 ~ 3788491 (-) False LOC122346554
TU62579 lncRNA upstream 130094 3786837 ~ 3800450 (-) True LOC122346554
XR_006251143.1 lncRNA upstream 130318 3787061 ~ 3795371 (-) False LOC122346554
TU62622 lncRNA upstream 196517 3853260 ~ 3855532 (-) True G42331
TU62654 lncRNA upstream 299471 3956214 ~ 3957667 (-) True G42354
XM_043242910.1 mRNA downstream 1151 3642933 ~ 3645898 (-) False rpsa
XM_043242909.1 mRNA downstream 1151 3642933 ~ 3645898 (-) True rpsa
XM_043241124.1 mRNA downstream 5873 3633893 ~ 3641176 (-) False ttc26
XM_043241587.1 mRNA upstream 646 3657389 ~ 3674875 (-) True myh9a
XM_043242609.1 mRNA upstream 19967 3676710 ~ 3721173 (-) False plppr2b
XM_043242608.1 mRNA upstream 19967 3676710 ~ 3718009 (-) False plppr2b
XM_043242614.1 mRNA upstream 19967 3676710 ~ 3718009 (-) False plppr2b
XM_043242610.1 mRNA upstream 19967 3676710 ~ 3718008 (-) False plppr2b
XR_006251245.1 other downstream 2645 3644266 ~ 3644404 (-) True LOC122347626
XR_006251230.1 other downstream 539152 3092540 ~ 3107897 (-) False cep170ab
XR_006251231.1 other downstream 539152 3094790 ~ 3107897 (-) False cep170ab
TU62012 other downstream 803791 2840662 ~ 2843258 (-) True G41955
TU61792 other downstream 1939641 1702833 ~ 1707408 (-) True G41781
TU62651 other upstream 295805 3952548 ~ 3954278 (-) False cep20
TU62650 other upstream 301624 3958367 ~ 3961542 (-) True G42351
unassigned_transcript_1084 other upstream 342868 3999611 ~ 3999692 (-) True trnas-cga_4
XR_006251246.1 other upstream 711418 4368161 ~ 4368244 (-) True LOC122347627
XR_006251142.1 other upstream 737664 4394407 ~ 4415213 (-) False cdk15

Expression Profile