RNA id: XR_006251636.1


Basic Information

Item Value
RNA id XR_006251636.1
length 286
lncRNA type intronic
GC content 0.47
exon number 3
gene id LOC122350892
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 7511034 ~ 7511534 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gaaaacattATTAGCTGTATTAAACAGTAATCGGCTGCAGAAGCAAAAGTTTTAAATCAAGCCTCCCTTCATTCACAAGCCATATGTTCTGCTCTTTTAATGTATAGACAAgcacattttacaaacattacatttgatATTAGGGGAAAAGTGGTGCTGAGGGGCCCAAAGGAAATCCCGGTCAGCAAGGTCTTCGAGGCCTACCAGGAGAGAAGGGCTACAGAGGACCTGCTGGCCCACAGGGAAACATAGGGCAGTGGGGTGAAACAGGTCTGCGGGGGCCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251631.1 lncRNA upstream 9547 7497374 ~ 7501487 (+) True LOC122350887
TU91517 lncRNA upstream 17301 7491994 ~ 7493733 (+) True G61820
XR_006251643.1 lncRNA upstream 207531 7302467 ~ 7303503 (+) True LOC122350910
XR_006251644.1 lncRNA upstream 207531 7302467 ~ 7303503 (+) False LOC122350910
TU91542 lncRNA upstream 208051 7302439 ~ 7302983 (+) True G61829
XR_006251634.1 lncRNA downstream 19 7511553 ~ 7512436 (+) True LOC122350889
XR_006251633.1 lncRNA downstream 19 7511553 ~ 7512434 (+) False LOC122350889
TU91655 lncRNA downstream 89209 7600743 ~ 7604022 (+) True G61902
TU91675 lncRNA downstream 238174 7749708 ~ 7756124 (+) True G61916
XR_006251640.1 lncRNA downstream 764041 8275575 ~ 8280335 (+) True LOC122350903
XM_043247649.1 mRNA upstream 373 7508814 ~ 7510661 (+) True LOC122350882
XM_043247358.1 mRNA upstream 5425 7502315 ~ 7505609 (+) True LOC122350681
XM_043246387.1 mRNA upstream 209974 7294115 ~ 7301060 (+) True LOC122350138
XM_043247355.1 mRNA upstream 217425 7291288 ~ 7293609 (+) True LOC122350677
XM_043247351.1 mRNA upstream 219786 7281725 ~ 7291248 (+) True LOC122350673
XM_043247645.1 mRNA downstream 1178 7512712 ~ 7516604 (+) True LOC122350878
XM_043247646.1 mRNA downstream 1178 7512712 ~ 7516410 (+) False LOC122350878
XM_043247637.1 mRNA downstream 9192 7520726 ~ 7529086 (+) False soat1
XM_043247623.1 mRNA downstream 18172 7529706 ~ 7553925 (+) True abl2
XM_043247624.1 mRNA downstream 30928 7542462 ~ 7553925 (+) False abl2
TU91367 other upstream 661323 6848481 ~ 6849711 (+) True G61713
TU91369 other upstream 661323 6848481 ~ 6849711 (+) False G61713
TU91312 other upstream 744491 6756105 ~ 6766543 (+) False G61678
TU91311 other upstream 750288 6756105 ~ 6760746 (+) False G61678
TU90655 other upstream 2247071 5238481 ~ 5263963 (+) False LOC122350082
TU91548 other downstream 13101 7524635 ~ 7529068 (+) False soat1
TU92500 other downstream 2192947 9704481 ~ 9705639 (+) True G62483
TU92869 other downstream 2837425 10348959 ~ 10353113 (+) False col2a1a
TU92796 other downstream 2920268 10431802 ~ 10440496 (+) False G62692
TU92799 other downstream 2957340 10468874 ~ 10478799 (+) True G62692