RNA id: XR_006251640.1


Basic Information

Item Value
RNA id XR_006251640.1
length 1663
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id LOC122350903
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 8275575 ~ 8280335 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cataaaacttttatCATAAgatattatttactaaaatacaGGCAAAAGATCCCGAAAGACAAACGACTATTGATACTATAATCTTTAAAGGCATTGTCTTACGGTTTGGCAGTACAAAACGCAGAttagacaacaacaaaaaatagctGTTAAAAGTTCATTACGtggactttttttcttcattatttttatttaccgGCAATTATTAGCCAAAACATGTTTCGTATTTTTTTGGTGATCTTTTAAAAAGACACGTTTTTGCTCTAGAGGTTTGCCGGAGAGCCATTTCCTCGTAGAATGACGTCAATATCGATAAAGGCGAAACGCACCCCGGAGCGCTATTGTGAGGATCTTTCTCTCCGCTGATACCCGGCCGGAGCGCGGCTGGACCCGAGCTACCTCCCCGCGGAACTCCCGCTGGAATGGTTTGAGCGCGCGGAGCGCGGCAGAGGACGCACAAGGCCGACGACAGACGAAATGATGCGAGCTCAGGCAGCAGCCAATTAAAATGCGGCTTCCATCCCTCCACATCTGCCTCCCTTTACAAACGAATCAAACAGAAAAGCAGGAACCCAGTGAAAGAGCGCTCATTGAGATCACAGATGGAGTATAGGTTTTTGCAAGAAATTTGAGAAACACCATTGTCCCAAATCCAAACTCAATGTGGTCCCTCACAATGGTTGGGGCTTTGAGCCGCGCCGACTCAATTGGCCTTGTTTTTTAAACTTGAAGTGTTGAGCACAAAGACCGGCCTCCTAAATGTCACAACCGCTCCGAGTGGGGCTCTGCAGCGCGATgctgcctgaaaaaaaaaagagagaaaaagaacacAATTATGAAGCAATAATTACTCTGCTTCTCTTCGCACGCCACTGCGTCTATTCAGGCCCCTTTAGCCCCATTTAATGCTTTATCCTCGTCCACGATAATCCGAATACCacagctttattattttttcttctccctTGCAGAATTTTCTTATGAGACGGGAGTGGGAAACGGGGATTGTGCTAAACCGGACAATGGCCGTGTCGACTTACTTTTTTAATATCGAAAGATTAATGCTTAGCGTCACAGCCGAGAGCTCGCGATACGAAATGTATATTAAACTCATTTATTGAAACGGATGTAAAATATtacgtttgtttttatttatttgtcgcATATTTATTAAGCAGCACCGTAActgatacaaataaaaatattgttttaattaaaagtgttttttggggGAGTAtaggctttttttaaatgttttttttttttaaacgtataaaaatgctgaaaatgtcaaGGACAACCGTAGACTATAATTgctaataatacaaaataattaaataaacgaCAACAAATACATCACATGTTTAAAAAGTAGCCTATATTATGTATCTATGATTAATATAGCAGATATAAAACACCAATTTTCATTCAGTGTGAAAAAAAGAGCACTTTTTTTGACTGACTATAGGCCAACGTTTAAGTTATTAAGTTATTTGCAGGACTGTGTAAAACGCACTACATAAAAGAGCTTCTTCTTTCGTTATCTTGAAGATTTGTCTTATTGCTTTGCTGAGTACTAATTTTTGTAAAGTCGTCTTAATATGTATCGAATATCCACGAAGAAAACTGTTTAATGAGTCCGTTCATATCACTAGACGTTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91675 lncRNA upstream 519451 7749708 ~ 7756124 (+) True G61916
TU91655 lncRNA upstream 671553 7600743 ~ 7604022 (+) True G61902
XR_006251634.1 lncRNA upstream 763139 7511553 ~ 7512436 (+) True LOC122350889
XR_006251633.1 lncRNA upstream 763141 7511553 ~ 7512434 (+) False LOC122350889
TU91560 lncRNA upstream 763147 7511083 ~ 7512428 (+) True G61841
TU91814 lncRNA downstream 3425 8283760 ~ 8283984 (+) True G62002
XR_006251625.1 lncRNA downstream 71696 8352031 ~ 8354451 (+) True LOC122350828
TU91828 lncRNA downstream 72231 8352566 ~ 8354301 (+) False LOC122350828
TU91837 lncRNA downstream 81742 8362077 ~ 8371721 (+) True G62021
TU91827 lncRNA downstream 112043 8392378 ~ 8394743 (+) True G62013
XM_043247149.1 mRNA upstream 58693 8142874 ~ 8216882 (+) False elavl4
XM_043247148.1 mRNA upstream 58693 8142874 ~ 8216882 (+) True elavl4
XM_043247150.1 mRNA upstream 58693 8142874 ~ 8216882 (+) False elavl4
XM_043247147.1 mRNA upstream 58693 8142874 ~ 8216882 (+) False elavl4
XM_043247154.1 mRNA upstream 58693 8142876 ~ 8216882 (+) False elavl4
XM_043245981.1 mRNA downstream 66948 8347283 ~ 8351468 (+) True cdkn2c
XM_043247877.1 mRNA downstream 176899 8457234 ~ 8463215 (+) False si:ch211-198n5.11
XM_043247876.1 mRNA downstream 177063 8457398 ~ 8463215 (+) True si:ch211-198n5.11
XM_043247027.1 mRNA downstream 196836 8477171 ~ 8478326 (+) True smim15
XM_043247023.1 mRNA downstream 199962 8480297 ~ 8488530 (+) False ercc8
TU91548 other upstream 746507 7524635 ~ 7529068 (+) False soat1
TU91547 other upstream 751679 7306119 ~ 7523896 (+) True soat1
TU91367 other upstream 1425864 6848481 ~ 6849711 (+) True G61713
TU91369 other upstream 1425864 6848481 ~ 6849711 (+) False G61713
TU91312 other upstream 1509032 6756105 ~ 6766543 (+) False G61678
TU92500 other downstream 1424146 9704481 ~ 9705639 (+) True G62483
TU92869 other downstream 2068624 10348959 ~ 10353113 (+) False col2a1a
TU92796 other downstream 2151467 10431802 ~ 10440496 (+) False G62692
TU92799 other downstream 2188539 10468874 ~ 10478799 (+) True G62692
XR_006251600.1 other downstream 2912389 11192724 ~ 11197803 (+) False LOC122350428

Expression Profile