RNA id: XM_043247147.1


Basic Information

Item Value
RNA id XM_043247147.1
length 5428
RNA type mRNA
GC content 0.43
exon number 10
gene id elavl4
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 8142874 ~ 8216882 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gggtgaggatggagagagagagagagaaagagagagagggagaggagttTAAACTAAGAGCTATGTTTTGGGACGAACTAATCTGCTAGAGAGCAGTGTGAGGATCGGAACGCATTGTGCGAGCGAGTGTGTGGAGGACAGATAAGGGAAGAAGCCCGGCAGACCGACTGCTTGTTTTAATGTGCTGACTCTGgggagctaaaaaaaaaaaaatattgactcTTCAGTCGTGCGGCGTGAGCCAGGGCACAAGCGCCACATTTAACAGAGTAGAGAAAAAGGAGCCGTAGAGCCACGAGAACGCAAAAAAAGCCCCACCAAAAAGCGACAAGAAACGAAACACCGCCAACAAGATGTTTGAAATCAGCCGAACACTGAATGCTGCTTTGTTGAGCAATGAGTGTCTGAAGATGATGGTAAGGTGTTCACAGAACTCGGCAGTAGCCCAGGCGGAAGGCTCCTTCCCAGGCATGGGCTCGCTGCTTTTCCCCCGAGATCCATCCAGCCAACTGGGGGCCAGGGAGCTGGGGGGATCGACAGAGACTCAGTGGCGTCAGGCAGACCTGCCGCAGCTCCAGGGCTGGGCTGAGAAGGGACTGCTGACACAGCCAAAGATGATAATCAGCAACATGGAGCCTCAGGTGACGAATGGGCCGAACTCCGCCACGGCCAATGGGCCCTCCAGCAACAGCCGCAGCTGCCCCTCGCCCATGCAGACTGGCGGCTCTAATGACGACAGCAAGACAAACCTCATTGTCAACTACCTGCCCCAGAACATGACCCAGGAAGAGTTCCGCAGCCTCTTCGGCAGCATTGGCGAAATTGAGTCCTGCAAGCTGGTTCGAGACAAAATCACAGGACAGAGTCTTGGCTATGGTTTCGTCAACTACATTGACCCAAAAGATGCAGAGAAAGCCATCAACACATTAAATGGACTTAGACTTCAGACCAAAACTATTAAGGTTTCGTATGCAAGGCCCAGTTCGGCTTCTATCCGTGACGCTAATCTGTACGTGAGTGGGCTACCCAAGACCATGACCCAGAAGGAGCTGGAACAGCTCTTCTCTCAGTATGGACGGATAATCACCTCCCGCATTCTCGTCGACCAGGTCACAGGCCCCACAGGTGGCTCGCGGGGTGTGGGCTTTATTCGCTTTGATAAGAGGATAGAAGCAGAGGAAGCCATCAAGGGTCTGAATGGACAGAAGCCCTCAGGTGCCGCTGAGCCCATTACGGTGAAGTTTGCCAACAACCCCAGCCAGAAGACCAGCCAGGCGCTACTGTCGCAGCTGTACCAATCCCCCAACCGCCGCTACCCAGGACCCCTCCACCACCAAGCGCAGAGGTTCAGGCTGGACAATTTGCTTAATATGGCCTATGGCGTTAAGAGGTTCTCCCCCATCACCATCGATAGCATGACCAGTCTAGTAGGGATGAATATCCCCGGTCACACAGGAACGGGCTGGTGCATCTTCGTCTACAACCTGTCACCGGACTCGGACGAGAGCGTCCTGTGGCAGCTCTTTGGACCGTTCGGCGCCGTCAACAACGTCAAGGTGATCCGCGACTTCAACACCAACAAGTGCAAGGGGTTCGGCTTCGTCACCATGACGAACTACGACGAAGCGGCCATGGCCATCGCCAGTCTGAATGGGTATCGGTTGGGTGACCGTGTCTTGCAAGTGTCTTTCAAGACCAACAAGACCCACAAGTCCTGAACTCCCCTCCCATCACTTGTGTAGCTCCTTACAGCTCCTCTAATACTAAAAACCCACCTCTGCCCACTCAGCTACTCAAAACAGGAACACACCCAACCAACAAACCCACAAAAAAGAACTGGATATGGCTTATAATATAACTTTGGACCTATAAGCCAATGTTGCCTAAGtattacaaaatgacaaattgAGAATATTCATTATTTGGAGACCCTGGAAGTGGTACAGGGATTCTGTTGTATATCTTCTTGAGTTCTCGTGGttgtcttttacttttttcttttttttttctctgtaaacaGTAGCAAAACCAGACCGCCCTTATTTTGAAGAAGAAAATGTCCTTCTTTAGATCGAACTCTCTTGGTGTCGATTCaggattttttctttcttttttaaatccgGATCCACTGTCGTTAGAATAATCGCCTCCCTGGTAAGAGAACAGGAGGgggctctttttaaaaaaagaagaagaaaaaaaatcggtgatcattcattcatttgttttggtgTAAATTGTTAGAGTTCCCCAAAATGAATTGACAGGGATGAGGCCATCCCTTTTCTCTAATGCAGAAGATGTTTCTAGCATAGTTTTGGTTTTGTactgcaaacaaaacacacgtCTGTCCTCACGGGGGATTCAGGGGGAAGGGGCGAGGGAAGGGACGGGCTAGCGCTCCTGATGACACGTtgcgtcaaaaaaaaaaaaaaaaaaaaacctacacacacactgttgccAAAGAGAAAATCTCTTTGCTTGAAAATGCGtttagaaaaaatgaaaaaataaagagaaagaagatctatttttataaataatgattaaaataattattgaagAATTTTTACAAGAATCTGGatttgaaaaaagagaaaaatattttgactgGCTAATTAGGGACGGGGGGAGGGGTCAGGTGCCACCTTGTCTTGTTCGTTCTGCCGTGGTACTTTTTAGGATCCAAGGTCGTTTGTTTTTCGGGGAGAACCGGATTGGCGATGGAAGAATTTTGTAGATGGAAGAATTTATCAAGGGATGCAAATTCAGGCAGGTAATTTTTCATAGCAGTAATTATTCAACAGCGATACCCAATAGGAGAGGGAGAGGGGTCTTCCCAGGCCAATCACATCTTCACAGTCAAGAGCCCAAAGCAAGGCCACTCATCGTCCACTCATTTACGTTAGACCATCCGTCTTTGGGATATAAGTAATAAAGatacacacgcgcgcgcacacacttcTTTCTCCATTCGGACGACATATACATGGTTATGTTTAATTCGCTATGATTTTGTGATATCGCATTCGAGATGTACTTCCTTTAGCGATCAACAGTAGGTGCTATATTACATGGTTCACATATCTTAAATATCCAACTTTGTTGTTCTTCGTGTtgtttagagagaaaaaaaagaaaatttcgATGTTGGCATTATATTaagctgctgtttttcttctttcgtTGATGTTTATTCTTTCGAATTCGCCGTTGTCGGTCGCCATCTGGTCTGGAGAACGCCCAGATGAACAAAGTCCGCGACGACGTTCCTTTGGCTTGCTTACTTCTAGGTTATTTGCTGAGTGTACAGCGTTTGTCGAAATTCAGCGATAATTAGCTAGTTCTGTTAGTCTAGTATTTGTTTCCTCAAAGGATCTATTACGACTGTGTCTTTCTTTGTTGTGTACAAATAGATGATATATAGTCAACATTTTCTGTTCcaatatctatatctatctgaGTTGTCACTGTTTTTCGTTCGGGATTGTCTTTTTTCATATGAAAACTTTATGAAGTGATGGTTCAGTTACTTAGAAAAACTCGTGAGGAATCCTGTTTAATATGTTGTCATGTCGCTTgtgaagataaagaaaaaaaaacgcaaaaaaaagaactgaaaaatTGGATCGAGTTATTTGATTTACCGCCGCAGCAAAAGAAACCGAACAAAAAGCTTCTTGagaaaaatctgtatttatttattgatcgattgattgattgtctcattgattaaattatttatttatctcgattatttatttatttacttgttccTTTCTTatgttgtctgtgtttttgcGTGATTCTGGTACAGGGAGGGGGGGGTCTTTCTGAGCTAAAGGGAACAAATGACTAGGGGAGACGCTCTTCCATTAGTCCTGTGCACTGAGAAATTTTAGTACGTTTGTGCTTTGTACCAATATAtcaaaattacaatacaaaaaaatttaaaagtcaaaaacgatAAAAAATGTCAAGAGGGTTGGTGAGGCTCTTCCCTTATTAATAGAAACAGTTACTCGCTATGCATAACCTAGCCGATAGTTCAATTTGCTATTGcttttttcttgtcttgttAAACATAAATCTTTAAATCTTTTTCAATAAAGTTTAGTCTTAATAGAATGTTATAACAGTTGTTCTGGTTCAATATAACCTGTGATAAGTTTGTGTAGTTTTAAAAGCCACTTCCCGCCCTCCCTCCACACACTACCGTTGCTTTGTGATTAAactttatgcaaaaatgtggGTCTGAAATGTAGTTTCTCATGGATCTCGACGACGTTCATGTCAGGCTTTGCTGCCCTAATTTGACTGATCGATATGTGTCCATTGTTTTAGTATGATTCATCGACTCATCTGAACTGTAACCTTCATCTAAACCACACCGACACTccagaaaaaggagaaaaggataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagcattgactCTGATTGTACTGGTTGAACAAAAATAGCTATAGCAGATAATATTTGATAGATGACACctgttatatattttctaaGATATAGTCTATTTTGAGAGGTAAACTTCCTGAATGGAGAGCTCGGCTCTTGCTAAGGCCGGTGTGAATGCTGGAGAACGAAAAACAAAAGTCACGTTCATGAGCAGTCTTACATTCCTCCACCTCTAATGCCATCCATCCTCCTCTGCTCCGTCTCTAAGGGGGCGGTGGCGGCGGCGGCACGGCCCTTCTCAAACCCCGCTGCGGCTGGGAGTTTGAATTATGCAACGACCCCAGTAGAATGTTGTTCTGATGTACGAACAAATTTCCTGCATTACGTCCTCCTCTTTTGGTTAATGGCATCACCCTCCGCGTGTCTGAGCGTGGATGACTGCACGGGAGAGCGTCTAGTTTGCGGGGGTGTTGGAAACGTGGGGCCGTGCCTCTATAGTGCGTGCCCGTATCGCAGTGTCTCTCCCCCTGTAGCGCCTTATAGTGGCAGCCTGCCAATAGGAACCCATCAGCCAGTAGTGTAGGAGGGAAGGCAAAGTGAGGAACAAGGCTCTTGTCATAATTCATTTTCTcctgaaatgtgtttgtttactatctgaaaaatctataaatctttaaagacaaaaaaagatgaaaaaaaaagaaaaaaaagttcaccGGACCAAGCTGGTCTCTCCTACTTACGTTATTACTTATCTATCGATTATTGATTATTGTTACtatgattaatattattctCATTATCCTTATTCTTATTACGAATCAAATTACTGCGATGAATGACTTCATGTTATCCTTGCTAGTTTAGGTCATTTCTGAAACTGGAaacaaaatatggaaaaaaatacttgctgtaaatgtttttttctttttcataaaactgttgtgtttgaattatttgtacttttgaaTGTTGGGACAATAAAATAAGGTGTTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91675 lncRNA upstream 386750 7749708 ~ 7756124 (+) True G61916
TU91655 lncRNA upstream 538852 7600743 ~ 7604022 (+) True G61902
XR_006251634.1 lncRNA upstream 630438 7511553 ~ 7512436 (+) True LOC122350889
XR_006251633.1 lncRNA upstream 630440 7511553 ~ 7512434 (+) False LOC122350889
TU91560 lncRNA upstream 630446 7511083 ~ 7512428 (+) True G61841
XR_006251640.1 lncRNA downstream 58693 8275575 ~ 8280335 (+) True LOC122350903
TU91814 lncRNA downstream 66878 8283760 ~ 8283984 (+) True G62002
XR_006251625.1 lncRNA downstream 135149 8352031 ~ 8354451 (+) True LOC122350828
TU91828 lncRNA downstream 135684 8352566 ~ 8354301 (+) False LOC122350828
TU91837 lncRNA downstream 145195 8362077 ~ 8371721 (+) True G62021
XM_043247359.1 mRNA upstream 114485 8020224 ~ 8028389 (+) True LOC122350682
XM_043247626.1 mRNA upstream 465518 7672038 ~ 7677356 (+) True dnttip2
XM_043247629.1 mRNA upstream 465518 7672038 ~ 7677356 (+) False dnttip2
XM_043247628.1 mRNA upstream 465518 7672050 ~ 7677356 (+) False dnttip2
XM_043247647.1 mRNA upstream 471067 7667093 ~ 7671807 (+) True gclm
XM_043245981.1 mRNA downstream 130401 8347283 ~ 8351468 (+) True cdkn2c
XM_043247877.1 mRNA downstream 240352 8457234 ~ 8463215 (+) False si:ch211-198n5.11
XM_043247876.1 mRNA downstream 240516 8457398 ~ 8463215 (+) True si:ch211-198n5.11
XM_043247027.1 mRNA downstream 260289 8477171 ~ 8478326 (+) True smim15
XM_043247023.1 mRNA downstream 263415 8480297 ~ 8488530 (+) False ercc8
TU91548 other upstream 613806 7524635 ~ 7529068 (+) False soat1
TU91547 other upstream 618978 7306119 ~ 7523896 (+) True soat1
TU91367 other upstream 1293163 6848481 ~ 6849711 (+) True G61713
TU91369 other upstream 1293163 6848481 ~ 6849711 (+) False G61713
TU91312 other upstream 1376331 6756105 ~ 6766543 (+) False G61678
TU92500 other downstream 1487599 9704481 ~ 9705639 (+) True G62483
TU92869 other downstream 2132077 10348959 ~ 10353113 (+) False col2a1a
TU92796 other downstream 2214920 10431802 ~ 10440496 (+) False G62692
TU92799 other downstream 2251992 10468874 ~ 10478799 (+) True G62692
XR_006251600.1 other downstream 2975842 11192724 ~ 11197803 (+) False LOC122350428

Expression Profile