RNA id: XM_007249791.3


Basic Information

Item Value
RNA id XM_007249791.3
length 2937
RNA type mRNA
GC content 0.42
exon number 9
gene id LOC103025907
representative False

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 10000994 ~ 10011792 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TATCTCTCAgttcttttttgctgtttatttacatttctttctttttcacgtGCTGTAGTTTTGTGGAGATTTGACATACACTGGGCGGTTGTGAGTGTTCTTAAAAGCCGCTATCATCAGACGGGCACCTGTTCTGGTGCTTAACCTACTAGGTTACCTTAGTGATGATAAAAAATCAAGAGCAGAGGGTGTTTTAACTTGGTTTAACTACATTTAGCAGCGTCTCAGAGTTTCTCAACACAGGGTGAACTTATAATTTGGcagtatttaaaaagtattacaAGCGAAACaactatatattttctatctGGGTTCGTTTTAAACAGAAGCAGTAGGTTATTCATTATTCTGGTTCTTCTCCGTCGTCCTGTATGGTTATATAAAGGAATATGGAAATGGGCGGGATTATAAAAACACAAGGCTGTTTTCTACTCATTAGATGAACCCGTTGTTTCAGAGCTGCGTAGAACATCATTAATAACCTAATTTAATGGTTTTAATGGGTAAGAAGTCGACAGAACTTCACACGTCTTACTTCAGGacccaccaccacctcctcctctgTTGAGATGATGTTGAAATGGATACAGGTGCTTATGGTGATACTGATGGTTGGTGGACTGATCTCTGCTCTTCCTCTGCAGGAAGCTGAAGGGAGAAGCAGCAGAATGCGTAGAAACACAAACTGCATAAAGTGTCCAGCAGGCAAATACTGTAAGTCTTGTAATGAGTGTGCTGATTGTCCTCGTTGGACCTACAACAGTAAGGAAAACACAGAGAGGAGATGTCATTCCTGCTACAAGAACTGCAGACCAGAGTTCCACATGCAGGTGGTGAAGAACTGCAGCAGTGTGTCTGATGTGGTGTGTCGCTGCATGGACGGCTATGTCTGCAAAAAAAAGGATCCTTATACAAATCAATGCACATTGTGTTCACCAATCCCAACCTCCCAGCCCACTACAACTTCTACTACTCAGCATGATCCTGAACCTAAAACTACTCCAGATGACAGAGACAAGGTTCATGCAGGTATAGAGGTCTGGATTGTGGTTGTAGTGCTGTTGAGTCTTACTCTGAGTGTTTTCATCACGATGCATCTCTGCAGACGAAGAAAAAAGTGCCTCAAGGACCTGGTGAAGCGATGCTCTCATGCTAATCAAAAGACCAATGCTGCTACTACAGCCTCTCCAATAGCTGAGCTGATCAGTCAGGCCCAGGCAGAGAAGGCGGATTCACCTACACCCACCAGCGACATCCCTGACATCCCCAGTCCTCAGCCTGCCAGCACAGAGCAGCTTGTTCCTCCTCATGGAAACCTAGgtcctctccacatttatGGTGCAGGCACAGTGTTTGTTAGTTTGCTGAACCAGTTTGGGCAGAACGGAAGAGAGAAGGAAGAAGAGCATCTCCAGCAGGGAGGCTTAAACGAGAGCGAGCTGCGCTGTCCCAGCTCTCCCAGCACTCCCAGCTCCCCTCCACTCCCTCTATCTACtgaagaaaacagtaaagacagCGGTTTTGTCTTTTTCCCTTCCCAGGAGCAAGGGAAGGAGTGTCACATGTCCAAAGAAGAAGGGCTGTATTAGATGTTTTAGACGCTTCTAGGCCCTTTTCGGTTAGCTGTGCGAATGCTGCGGGTGCTTCGAGCTTTATGAGTACTCTACACCACATCTTTGGCACTATGTTCTGTCCAAAGATCTAGAGAAGGTTTACACTCAGTATTGCTCCAGTCCACAGCTTCCCCAACTCAACCTGGGGACAGCTGTGATCCTGAAAAAGCAGCATCGAAACAGCGTCTGCTTGCAGATAGACACAAATGTACTagtttgtgtgtatgagtatgCAAGCCTGcttgcacatgtgtgtgtgtgtttgtgtataagtGAACATGTGTTTTAGGCCTTTGTGCCTGTTTCAATCACATTGTTCACATTCGTAGATGAAGATGCATCAACTAATCTCCAAAAGGCCTGGATACAGGGAATGGCAGCAGCAGTGGGTTATGATATGCAGTGTAGGAGATGAGGGTAATATGAAACAGTGTGATAGATTACATTGTAACCCCTGACGGATACATTAGAGTTACacaattattgcaataaaaatgCTGCTAAGTGGATTTTTAAAGCTGTactaaacatgctttttttaaatatgaggaAAATCTCTCTTTTGTAAATGACCTTCATTACAATACTTATTGTTACAGAGAGTCCACAGCCAGAAATGCCGAACAgtatgtattaaaaaacacaaagtgtATTAAAACAACAGTTCTCACATCCTTTTAGCAGATTTGCACACATAAAGGCAGTCATTAATGAGCATGCCAAGGTGGAGCTTAGTAAGTAGCTGGCCAAGTAAACAGGAGCCAATCAGTGGAGACATCAATATTATGAGGAGATAGTAATCAATGTAATTCATCGATTTATGCGGAATTTAAAGGCAGAAACAACCCAATTTTCTGCTAATTGGGTATGCTCTACACAGACTTAGAATAGCAAAAGTGTTATTTATTGGCATTAAAAGGTTATGGTTGGACAAATCACCCATTTTAGCTATATGATAAAAGGAGTATGTATATGACAATGTTTATAGATGAACGAAAGCACTTTAAGCCTTTTTTGGTTCAAGGATGTAATGTTGATTTTTAAACCAAAGTCGAAGGATTTTCCTCAAAAACAGTTAAGTCAGTCCAGTGTATCCAGGCCTGGAGAGTTTGCACTGTTGCCCAGTCTGGATCTCGTCCTTTCTGCATCCCTTAGCTTCCTTGCGCCTCATTCTTAGTCATGTGACACCATAACATACAGACCCCAGAGTCCAGTGAAGAGAGCCTCATTTGTGGTCTATGTAACTcttattattagagtgtgttttgtatgtgtttttattattatattgtcaatgcaaaaaaaaaaaattgtaaatgtttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120527 lncRNA upstream 690 9984874 ~ 10000908 (+) False iffo1
TU120367 lncRNA upstream 208589 9792682 ~ 9793009 (+) True G89492
TU120309 lncRNA upstream 388618 9612722 ~ 9612980 (+) True G89455
TU120306 lncRNA upstream 393111 9603646 ~ 9608487 (+) True G89454
TU120537 lncRNA downstream 358 10012150 ~ 10012423 (+) True G89619
TU120543 lncRNA downstream 78092 10089884 ~ 10094504 (+) True G89624
TU120544 lncRNA downstream 78092 10089884 ~ 10094504 (+) False G89624
TU120546 lncRNA downstream 78092 10089884 ~ 10094504 (+) False G89624
TU120564 lncRNA downstream 94333 10106125 ~ 10180419 (+) True G89636
XM_022673503.1 mRNA upstream 684 9975197 ~ 10000914 (+) True iffo1
XM_007249839.2 mRNA upstream 684 9975199 ~ 10000914 (+) False iffo1
XM_022673355.1 mRNA upstream 27017 9968033 ~ 9974581 (+) True LOC103040328
XM_007249798.3 mRNA upstream 36993 9958551 ~ 9964605 (+) True gapdh
XM_015605908.2 mRNA upstream 51356 9945738 ~ 9950242 (+) True LOC103028234
XM_022673501.1 mRNA downstream 14388 10026180 ~ 10071479 (+) True LOC103039700
XM_022673502.1 mRNA downstream 89758 10101550 ~ 10105116 (+) True LOC111193325
XM_007249781.3 mRNA downstream 194771 10206563 ~ 10212681 (+) True LOC103023172
XM_015605932.2 mRNA downstream 605730 10617522 ~ 10632206 (+) True LOC103038777
XM_007249777.3 mRNA downstream 624142 10635934 ~ 10654955 (+) True tnfaip8l2
TU120304 other upstream 391344 9602771 ~ 9610254 (+) True G89453
TU119784 other upstream 1752164 8246214 ~ 8249434 (+) False sumo1
TU119517 other upstream 2421638 7578610 ~ 7579960 (+) True G88849
trnap-agg_3 other upstream 2758621 7242906 ~ 7242977 (+) True trnap-agg_3
TU119113 other upstream 4877872 4911656 ~ 5123726 (+) False pard3
TU120818 other downstream 673865 10685657 ~ 10686056 (+) True G89805
TU120819 other downstream 676474 10688266 ~ 10688820 (+) True G89806
TU120940 other downstream 892852 10904644 ~ 10907172 (+) False LOC111193328
TU121370 other downstream 2123782 12135574 ~ 12138638 (+) False LOC103025787
TU121367 other downstream 2143105 12154897 ~ 12156862 (+) True G90199

Expression Profile