RNA id: TU120564


Basic Information

Item Value
RNA id TU120564
length 3243
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G89636
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 10106125 ~ 10180419 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aCTCCAGTCAGACTTTATCCATGTAGccaaatgaacaaacagaaaaagcaaataaacaaagtaaataaaaaggcaaaaaaggacaaataaaacatgttttagacaccaccagtcttaccaTTAATAAATACAAGCGGCATTCTGCATTCACTGCATTAATCTCCTCACACATTCATCACATTACAGTCAAATAGCAGCCTCGGCTAAACCACGCCTCTCTTTCAACTGGGGTCTAGTTATAAAATGGCATTGACATAAAAGAAATATTCAAACTATTTAATTGTGTACATTTGGATTGAGTTTTAAAGTCATAATTTTAGTTCTTTGTAGGTCCAATCCATTTCTAAAAGCCAAGAATATTTGTAATGCATATTAATTGTGCAATTTCACCTCTAATTGGAATGGGCAAAGTGAAAAACCTGTTTCACTTTTATTCACAATCTTATTTcagaataaagtaaaaaaaaaaaaatctttgtacaaaacaaacagcagaatgGTGTTTAGCACAGGGCTAAAAAATATTCACCTGTAGTTATGAGGGTCATTTTCCAGTTAAAAGTATTCTATTCTCCTCTAATAATAATGAGAATGTATCCTGAACATCATCATCTCAACATAATTGTCAGTTTGGATATTAAacaaaagtattaaataataatgctgGTGACCAGGGACACGCCTGGTTCACCAACCTTTTCAGAGCACCAGTTGATCTAAGGAACTTTGTTATTGCACAAAGTAGTAGTAAAGTAGCATTAGCAATTAGCAAACGACACAAAGGAGGTACATCATATGTCTCATACATCTAATGAACGGAAGGTGCGAGACTGTAGTGGGCTGTTTGGTCCTAATTCTAAACCCATCACTTCACTGATACTAATCAGAGCCTGAACATGAAGTACAGTTCAGTACCTTTCAGAAGTATAGTCTATAGTAAAATGATGTCATTTTTGTCCTTATTACCTGGAACATGTTTAAAGAGAGGGAGTGATAAGAACTAGCTATCTAAAATGGAACTAGTAACATAGGTAAAATACAAGAAAAGAGCAGCTTTTTATTTGAGGTGAATAGAAGAGAGATCACACTAAGGGAAAGGCTGTAATAATAGCCCTAAAACACGGGGTTCCAAATCCATCAAACCTCAAAAAGGAACACATTCGTTAGAGGAGTTTGAGAGATGTTTCTGTGTGGTTTAATGCAACTCTCACATTAAACCACATAGAAATTACCagtaaatacactttttaaggCTTTGTTAGCCAAGGAACGTCTTTCCTCACAGCAAATACTGCCAgagaaaactataaaaaacaacCCTCATTTTAACCATTCAGCTACATCAGATTCAATTCTACTGTGGTCTGATAAGAGCTCACTAACTCTTCaattagtgcagaaaaaaaacagctaggATTAGAAGAAACTCAGGGAAGGTTGTAGGTGTTCACTCGGGAGATGCTGTTGTCAAACTGTTGTTGAAACAGCGTCACTACAAGCCTATTCTAAGCCTAAACTACAGACCTGAGCTGTGTCCCAAACTGAGCCCTATTCACTCTATAGTGCACTTTTGTAGTGTTGTCTGAAAATGTAGTGCTGAATTTTGAGTGTGCTGAAACTATCATTTAATgaactgtaatatatatacatatatatattctgtagtGTACAAACAATGTATAGTATTGAAATACCAATAAAATACATCACGTTTGGAGGAAGATCAAAGTTTAGATTGTTTTATGCAATGTAATCTGTTCTCACAAAGAAATTACTTCATATTAGGATTGAAAGATATGGGGAAAATATTATATAGtgatatttaaagttattttcatgataaacaatatgtatcatgatattctgacatgcagacaaaatgcaCCAGGTAAGATCCAAGACCCAAAaactgatatttaaatattctcaTACTTAGGAAAgtgatttatattatattatattatattataagcgGTGCACTAATTCCAATTTAACATAACTAATTTCACTCATTCTAATGAAATGTGCAGCTGATCAGTGTTCTCTATGCACTGACAATATCCATGATATGATCAAATAATTATATTGTGTGCATTCATAACCAGATATGCCCCCCCGTCTCACACATATGACAACACCTCCCAAATCATTTATATTGTTAAACTTGTTGAATTTGTACCCAGTACGGTTTTGGACACAGCTCTGGACTACTCTCTGCTCTGGACTTAACTACTGTAGAACTGCCTTAGTTAATATCCCTTTCTTCATCCATTCGCCTCAGATTTGGTAAAACATAAAAGCTTTGTTCCGTAACTATTTTACACGacctgttaaaaaaacaaacatattacaTGTCATTTTGATAAATACAAAGATACTTTTGACAGTGATGTGCCTGAAACAATGAGATCGCTTAGTAACAATGTATTATTCCTTTGCTAATATTgtttagctgagctgagcacaacaagactgaaaaaaaaaacctcacagATGACCCACAGCATTCCAGTCTGTCTTATTCTTGGTAAGTTCTTAGTCTtggttatttttagtttaatatttctCATGACTCTCTCACTTTTCCATCGCTCTAGTTTCGCTCTTCTCAGAGGAACTGCGACTTTTTGTTAAAATGCAAAGAATAGGCAACAACCATGATATACACttatcaacaaaaaaaacagacaaattataaataaataacatgaataatgacaatattttagcTTGATAAGATTACGGTCAGGCTGTCTGAAACTGGTAGTGATATGAGAAGATGTAAGAAGAAGTTTATAAATCCTAAAGGTCTAACTACTCACAGTCTACGCAACAACTCCGAATGAACTCACTTCAGAATTAATAACTGTCTGCTGACCTGAAAGATCAAGGCCGGCATCTATAGTACCCTGGATGTTATAGGAAATCGAACAAGGCCCATCTTCCCAAAAATGCTGCATCTTATCTATGATGATAATTCTCTATTCTTATTTGATATTAGCTGTTTGGGAAACACTTCTTAAGACTGATTTTATAATGACCTTGCGCAATGTTTTGTGGGACCCAACCCACAATAGATATAACTAATGTTTCTAATGCATTTTGAGCCAATGCGAAACACCAATGAAATATTACTGTTATGTACATGAATAGTGAAAATGTGTttcatcttatttattttctaatgcacgtatttttgttgtatttttgttctacatgttgttttttggttttttttttcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120543 lncRNA upstream 11621 10089884 ~ 10094504 (+) True G89624
TU120544 lncRNA upstream 11621 10089884 ~ 10094504 (+) False G89624
TU120546 lncRNA upstream 11621 10089884 ~ 10094504 (+) False G89624
TU120537 lncRNA upstream 93702 10012150 ~ 10012423 (+) True G89619
TU120527 lncRNA upstream 105217 9984874 ~ 10000908 (+) False iffo1
XR_001518682.2 lncRNA downstream 47524 10227943 ~ 10289605 (+) True LOC103022254
TU120594 lncRNA downstream 63908 10244327 ~ 10244683 (+) True G89665
TU120597 lncRNA downstream 68890 10249309 ~ 10302377 (+) True G89667
TU120547 lncRNA downstream 272150 10452569 ~ 10453879 (+) False G89624
TU120814 lncRNA downstream 484971 10665390 ~ 10666011 (+) True G89802
XM_022673502.1 mRNA upstream 1009 10101550 ~ 10105116 (+) True LOC111193325
XM_022673501.1 mRNA upstream 34646 10026180 ~ 10071479 (+) True LOC103039700
XM_007249790.3 mRNA upstream 94333 10000994 ~ 10011792 (+) True LOC103025907
XM_007249781.3 mRNA downstream 26144 10206563 ~ 10212681 (+) True LOC103023172
XM_015605932.2 mRNA downstream 437103 10617522 ~ 10632206 (+) True LOC103038777
XM_007249777.3 mRNA downstream 455515 10635934 ~ 10654955 (+) True tnfaip8l2
XM_007249776.3 mRNA downstream 479256 10659675 ~ 10663950 (+) True scnm1
XM_022673516.1 mRNA downstream 564932 10745351 ~ 10752631 (+) True hormad1
TU120304 other upstream 495871 9602771 ~ 9610254 (+) True G89453
TU119784 other upstream 1856691 8246214 ~ 8249434 (+) False sumo1
TU119517 other upstream 2526165 7578610 ~ 7579960 (+) True G88849
trnap-agg_3 other upstream 2863148 7242906 ~ 7242977 (+) True trnap-agg_3
TU119113 other upstream 4982399 4911656 ~ 5123726 (+) False pard3
TU120818 other downstream 505238 10685657 ~ 10686056 (+) True G89805
TU120819 other downstream 507847 10688266 ~ 10688820 (+) True G89806
TU120940 other downstream 724225 10904644 ~ 10907172 (+) False LOC111193328
TU121370 other downstream 1955155 12135574 ~ 12138638 (+) False LOC103025787
TU121367 other downstream 1974478 12154897 ~ 12156862 (+) True G90199

Expression Profile