RNA id: XM_022673501.1


Basic Information

Item Value
RNA id XM_022673501.1
length 4171
RNA type mRNA
GC content 0.45
exon number 15
gene id LOC103039700
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 10026180 ~ 10071479 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTCATTCTATTCATAGCAATTTGGCTTCTTTGCTAGAGCATTTTCCCCAACATACAGGTTCTCCCCCCCTTCTACACAAAGCTGTGCGCTCTACTGGCCAGTATAAGAGGAAGCTCTGGAAGACGGCCTCACTTCCCCAAGGATCAGCACAAAGATCAGACTCACAGaagaagaagcagaggCCTGTGGATTTCTCTACAGTGAGTAAGGGATCGTCTGGCAGCAGTAGGTCTAGAGGAGCACTGATGCAGGCGCTGTTCAGTCAGAATGCATCTGAAAAGTCTTCTACTCAGGAGGATAAAGGAGTTGCTGCTGGAGGTCAGGAGCAGGTGGAGGTGCTGAAACAGACCCTGGAGTCGTTCCCTTTGCCAGCTGAGATCAGCTGGAGGTGGGGGGAGGAAGACAAAGCTGATGTCCTGGAGAAGAGCTGGACAGACATAGTGCACTCTCATGAGTCAATGTCCAAAACCCAGAGGCACCAGCAGGAAGCGCTATGGGAACTCCTTCAGACTGAGCTTGTTTACATCAACAAACTTACCATCATCACTGAGCTTGTTTTATCTGCACTGGAATATGTTCATCAGCGGGGATTCCTCCTGGAGGTCACTTCTGCCCAGCTCTTCTCAAACCTTCCCTCCATCCTCGAAGCTCATAAGCTCTTCTGGCGGGACGTGATGTACCCCATGTTAATAAACGTCCGGCAGACTGGACAGCCTTTCGACCCTTTGAAGCTGGAGCCGGGATGTCTGCAGTTTGCAGAGCGATTCTCTGCATATTTGGATTACTGCTGGGAGGAGGAGAGAAATGTGGAGTTCACACGCAGACAACTGGAATCAAACCCACAATTCCAGGCATATCTTTTGTGGGTGGAGACTCATCCACAATGTGTGCGAATGCGCCTGGGTGACATGCAGGCGAAGCCCCACCAGAGGATCACGAAGTACCCCCTGCTATTGAAAGCCATTCTGAAGACCACAGAAGACACCCACACACAGGGCACACTCCACCGCATGTTGAACAGTGTTGGACAATTTCTGGACAGCATCAACGACTACCTTCAGTTTAAGGATGATGAGCTGGCTCTCTTTGACCTTTCTCAAAGAATAGAGGGATATGAGACACAGGGGATGAATGAAGAGATAGACAAGTTCATACAAGAGGCCTGTCGCTTTGATCTGACTAGCCCTGTCCAGGGAATGGGCCCTACAGTCATACGCAAGCTGCTCATGGAAGAGACCCTAAAGGTTAGAGGCCGGAAAGACAGTAAGCTGGAGGTGGTGGCCCTGCTCTTCACTGATGTTCTACTGCTGACCAAAAGCCAGAAGAAATCagagaagcacaaggtagtgcGCCCCCCGGTGTCCCTGGAGAGAACACACTGTGCTGAGCTCAAGGACGGCTACTCTTTTGTGTTGGTAGAGGCGAGTGATCTTGGTTGTGCAGTCAATGTGTACAGCGTCTCTGCCCCCAGCCCAGAGAGCTGTACAGCGTGGGTCTCTGCGATTAACCAAGCCAAGGAAGCATTGGACACCTTAAGGAGAAACCAAAACCAACCTAAACCAAAGGAACCCAGTGAGCCGACTGAATTAGAGGAGACAGAAACGCTTACTTCTCCCATCATTCAGGTCTCTGAGAACAAAGAGGAAGGAGTAGAGGAGCAATCAGAGTTTACTGGCACTTTGTCTCAGGTTACACCTGACCTAAAGATTACAGGTAACCATTTAGTGAGTGAAGAATATTTACCAGTAGAAGCTGAGGTGCAAAATTCCCACATTCCTGTAATACATGCAAGttctttaaacaaacaaatgcaaaaCCGAGACAAAAAGTCCCCTGATGAAACAATGCAGCAATCTAGAGGAACCGAGAGCAGAGAATATGATCAGCAGGAGGACATGAGTGTAAATGAAAGACGAGTTACATGGAGCCATAAACCCACAGACTTGAATGGCATTTCAGAAGACTCAGAAAACAACAAGTCAAATGGTCCACATTCCCAAGAATCCACCTCCTGGCAGGAATCCTGGAAATCAGGTGAAGTAGATGAAGCTCTGTCCGAATCATCGAGATTCTACAGAAAATTAAAGTCACCAAGGTTACGGAGGAAGCGTATAATGAATGCTCAGCCTGCTGTTCCACCCCAGGGCTCCAGGAGAATGTCAGATGGGATAGAATCAGCAAAGATATTACCCAACAGAAATTCCTCCTCAAACTCAGACTCTGATGGGAACAATAGCCAGCGAAGGCCCTCGGATACCGCCTCCAAACCCCAGGATTCGCACCTGGTGCTCAAGCTGGGCTCCTTAATGCGGAACCCAGGTGTCTTCTGGAACGCTTCCACTGAGAGATCATCCCCTGACCTGCAGACGCTCTCTGAGCCAGAGCTGCCTAAAGAGTCACCTCAGAACTCTCCTAAATTTACTCGAAAGAAAAGTCAGAGAAGGGCTTCTGTACCTGAGGCCATTTACACTAACAGCCAAAGCTTACCCCAAAATATCCCCCCCAGACTCAGTCCCTCACCCCCGACAGCGCCTGACCCCCGGATCCACCCCTCCCCCCTCCAGGGCCTTCTAGCGAGGGCCAAGGAGCGAGACAGAGACCGAGGGGTGGCTAAAAAGGAGGGAAAGCCAGCTGGAAATAAAAATTCACTTCAGAGCCCTTTCTCAGTCTCCAGCACCCCGTCACCCTCACCCAGTGAAGCAGAAGAGCAAGATCTGCTCAGACTacacagagggagggagagcaGTGTGGATGGCCCTGAGATTGAGTGGAGAAACAGCCCTGTTACTCCCATGGGTGCGAGTGTGGACTGGCCAGGCTGGTGCTTTGATGATGCAGAAGTGCTGGAATTCTTGAGACCGTCTGATCAGACAGACTGGTTCAACCAGACCCTGACAGAGTTTCAGGATACACCAAGACACGAGGATGGAGAGTACAGTGAAGTCTAGAGCCATGGACAGAGTGTGTAATGCTTCATATGCTTCATGTGCACCAGAATGTACTGCTGGAACCTCTGACCTGAGTTGGAACTAGGGCCAAAGTGCAGTTTCCTCAAAATAAAGTGTAGTTAAACGTCTGACCTGTGTTCTCCTGCtccaaaaaaaaggttttcagtGTTCTGGTGTTTGACTCAGAGCTGAAACACATTACAAAACAACCTGCTTTTCATCACattttcaatcatgtttttactGTCACACAGAAACGGCAAACAGTATTTAACCACGTAGATATTTCcccttttattgcttttatacattaatttacCTTCAGTATAAACTGCCTTTTTTGTTGGATGtttaatatatacaatgtaaacCACGTGAGtaaattattaaagtatttacTCTCTTAAAAGTGACTGCTGTGAATGTATCTCAGGTGTTTGTAGTATAAAGAGACCTGAGTGGAAGAACCAATCACCTACCAATCTGTattcctgcaaataaatacacCATAAAGACCAAAGAACACAATTATACAGATCTGAGAAAAGCTTATTAAAGAGAATACATCAGGAGATTTTGAGAAAAATCCCTTGGAGTTAAATGCATCCGTTAAAATTGTAAGAAATATGATGCAAGTGCAAATCTGTCTAGAACAGACCATTCTGTTGAGAACAGGCCAAATCTGTTTGTACTTCTATATTTAGGAGGttgttcttttttgtcttttaaaaaatccaaaatatttacatttaaaaaagcaataaaaggggaaaacactgccaaacactctctttgtttaaaaaaactaccatattaatatagtaatattacTGGGTTGTGAGACATTATGGAAAAGTCATTCATTCAGATGTTATACAGAATGTAGgcctattcatttatttttcatccAACAACAAACTCAACAACAAACCTTCAGAGCacaggttgggaaccactgctgTAAATGTACAGATTTGTTGCCTTCCATGTAGAAGttgcatatactgtatagacCTCAAAAGTGTGTATAATCTAACCGGAAAGTGCACTATTTTGATAAAATGTGGAATTTTACTGTTGTATATACtgtgctgtaaatactgtacaaaATTCATACatcaattattttattcatcattttttatttttgttgtatctatttacagtattttatttgtatacatTTACACAATATCATAGATAAAGATCAGCATTCAAGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120537 lncRNA upstream 13757 10012150 ~ 10012423 (+) True G89619
TU120527 lncRNA upstream 25272 9984874 ~ 10000908 (+) False iffo1
TU120367 lncRNA upstream 233171 9792682 ~ 9793009 (+) True G89492
TU120309 lncRNA upstream 413200 9612722 ~ 9612980 (+) True G89455
TU120306 lncRNA upstream 417693 9603646 ~ 9608487 (+) True G89454
TU120543 lncRNA downstream 18405 10089884 ~ 10094504 (+) True G89624
TU120544 lncRNA downstream 18405 10089884 ~ 10094504 (+) False G89624
TU120546 lncRNA downstream 18405 10089884 ~ 10094504 (+) False G89624
TU120564 lncRNA downstream 34646 10106125 ~ 10180419 (+) True G89636
XR_001518682.2 lncRNA downstream 156464 10227943 ~ 10289605 (+) True LOC103022254
XM_007249790.3 mRNA upstream 14388 10000994 ~ 10011792 (+) True LOC103025907
XM_022673508.1 mRNA upstream 14388 10000994 ~ 10011792 (+) False LOC103025907
XM_007249791.3 mRNA upstream 14388 10001598 ~ 10011792 (+) False LOC103025907
XM_007249794.3 mRNA upstream 14388 10001598 ~ 10011792 (+) False LOC103025907
XM_022673503.1 mRNA upstream 25266 9975197 ~ 10000914 (+) True iffo1
XM_022673502.1 mRNA downstream 30071 10101550 ~ 10105116 (+) True LOC111193325
XM_007249781.3 mRNA downstream 135084 10206563 ~ 10212681 (+) True LOC103023172
XM_015605932.2 mRNA downstream 546043 10617522 ~ 10632206 (+) True LOC103038777
XM_007249777.3 mRNA downstream 564455 10635934 ~ 10654955 (+) True tnfaip8l2
XM_007249776.3 mRNA downstream 588196 10659675 ~ 10663950 (+) True scnm1
TU120304 other upstream 415926 9602771 ~ 9610254 (+) True G89453
TU119784 other upstream 1776746 8246214 ~ 8249434 (+) False sumo1
TU119517 other upstream 2446220 7578610 ~ 7579960 (+) True G88849
trnap-agg_3 other upstream 2783203 7242906 ~ 7242977 (+) True trnap-agg_3
TU119113 other upstream 4902454 4911656 ~ 5123726 (+) False pard3
TU120818 other downstream 614178 10685657 ~ 10686056 (+) True G89805
TU120819 other downstream 616787 10688266 ~ 10688820 (+) True G89806
TU120940 other downstream 833165 10904644 ~ 10907172 (+) False LOC111193328
TU121370 other downstream 2064095 12135574 ~ 12138638 (+) False LOC103025787
TU121367 other downstream 2083418 12154897 ~ 12156862 (+) True G90199

Expression Profile