RNA id: TU104718


Basic Information

Item Value
RNA id TU104718
length 751
RNA type TUCP
GC content 0.44
exon number 3
gene id gchfr
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 2150788 ~ 2155348 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGAGGGAGAGCGCGCGGCGTGGAGCAGGACACCTAAACCATCCTCCAGACATCAGCCCGAGACCACAGCCCGGCATGCCTTACCTCCTCATCAGCACCCAGATCCGCCTGGAGACTGGGCCCACCATGGTAGGAGACGAGTTCTCAGATCCTTCCATCATGAGCTATTTGGGAGCCAGGAAAACCACCATGCTGGGCAACAACTTTTCAGAATACCACGTGGATGAACCTCCTCGAATGGTTCTGGACAAGCTGGAGAAGATCGGATATAAAGTCGTGACGATGACGGGGGTCGGCCAGACCCTGGTGTGGTGCCTTCACAAAGAGTCCAGCGACCTCTGATAACCTCCAGCGGATCATTCTctgttgcacttttttttttttagttttttttttagtttttgtaaaaatgtgagAGTCTATAGTGTTTACACTACCAGGTGAGGGTATGAGGTCACGGTCCAGGTTCTGGTCCATGATCTTAttcagtgatgatgatgatgatgatgatgatgatgagataCTGGGTTGGGGGGGGACCAGTATTATACATGTATTAAAAATtgttttcattgtgttttttgtagttttgctACTAGAACTCTTATGCTAAAGCTGCACATTAAATATGCcttattaaaaaatgacaacGCTGGTGTTTAActtaattaaaaacactgtgttacaCCAGTTTACACTTTATTTGAATCTGCTTTTTCTCTCAAATCAACTTCATTACATGAATTACTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104724 lncRNA downstream 5165 2087617 ~ 2146273 (-) True G77641
TU104705 lncRNA downstream 104197 2042998 ~ 2047241 (-) False LOC111193168
XR_002650297.1 lncRNA downstream 104395 2042959 ~ 2047043 (-) False LOC111193168
TU104697 lncRNA downstream 123472 2008069 ~ 2027966 (-) True G77630
TU104692 lncRNA downstream 209823 1938885 ~ 1941615 (-) True G77626
TU104741 lncRNA upstream 28646 2183986 ~ 2185863 (-) True G77655
TU104774 lncRNA upstream 204391 2359731 ~ 2359936 (-) True G77683
TU104775 lncRNA upstream 237536 2392876 ~ 2393116 (-) True G77684
TU104790 lncRNA upstream 293233 2448573 ~ 2469056 (-) True G77695
TU104793 lncRNA upstream 296082 2451422 ~ 2477759 (-) True G77696
XM_022672589.1 mRNA downstream 17003 2129198 ~ 2134435 (-) True LOC103030988
XM_022672587.1 mRNA downstream 84413 2061458 ~ 2067025 (-) True LOC111188180
XM_022672456.1 mRNA downstream 90301 2047308 ~ 2061137 (-) True LOC103031516
XM_022672586.1 mRNA downstream 110152 2030382 ~ 2041286 (-) True adssl1
XM_007230350.3 mRNA downstream 125627 2022283 ~ 2025811 (-) True siva1
XM_022672457.1 mRNA upstream 66168 2221508 ~ 2232432 (-) True LOC103039711
XM_015606920.2 mRNA upstream 161287 2316627 ~ 2331376 (-) True thbs1
XM_022672593.1 mRNA upstream 276815 2432155 ~ 2457592 (-) True acp7
XM_007257929.3 mRNA upstream 276815 2432155 ~ 2457017 (-) False acp7
XM_007257925.2 mRNA upstream 322796 2478136 ~ 2505873 (-) True LOC103025843
TU104704 other downstream 104197 2042998 ~ 2047241 (-) True LOC111193168
TU104677 other downstream 291057 1853644 ~ 1860381 (-) False srp14
TU104678 other downstream 291057 1853644 ~ 1860381 (-) True srp14
TU104667 other downstream 386907 1717508 ~ 1764531 (-) False LOC103034803
XR_002650296.1 other downstream 720194 1368097 ~ 1431244 (-) True LOC103042803
TU104742 other upstream 34973 2190313 ~ 2190653 (-) True G77656
TU104917 other upstream 1041789 3197129 ~ 3206216 (-) False bmf
TU105040 other upstream 1142242 3297582 ~ 3348989 (-) True G77892
XR_002650301.1 other upstream 1477754 3633094 ~ 3638915 (-) True LOC111193170
TU105108 other upstream 1536267 3691607 ~ 3714277 (-) False prkd1

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU2238618 True 1047 TUCP 0.42 3 NC_048589.1 17948648 ~ 17953488 (+)