RNA id: TU117588


Basic Information

Item Value
RNA id TU117588
length 1842
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G87303
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 41192136 ~ 41194182 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gagtaaagcagcataaagttatccaaaagcagtgtgtaagactggtggaggagaacatgatgccaagatgcatgaaatgtctgtagtttatagaataaaacaacaatgttcattttactcaaacataaacctatgaatagcaaaatcagagaaactaattcagaaactgaagtgctctcttatttttttccagagctgtatgtctgtctgGAATCAATAGTTAGTTGTTTCCTCACCTCATAGATGAGTCTCCActgtgctcttggggtaattttgagTGAGCGCCGACCTTCTGGAAGAGTAGCCACATTGCCAAACTGTTTCTGTTTGTAAATTATTTGCTTTACTGTAGATTGGTTACTTTCTAAAGTctctaaaatcactttttaaccCCTTTTTAGTTTTATGTAGGCTACGGAGATTAGGCCATActacaggttgtaaacagtgtttttttaataagcttcatgtgcactttttaagttattaacgtctcgttttaaatgtcagtgccctccagattctaccaatgaagtttggagctacttttagcctgaataacagtgtaaaaagcgatttattggggcaaattatgccccgaaGTGGCCAttgatctcagaaagctgtgggagagcggaggtgggctatttaacaaaggtttgtactcttttttttatcatgttttagtaCAGAAAAAGAcaatttcacaccggagttcttcTTTAAGAGTTCACATAATTTTTCCACCAGAACTATGAGgtcataatttatattttttgtgtttttttttcaatttccagaCACATTTTACTCTTTAATGCCATTGACTGGATGAAGATCAAATCATATTTTATGACAAAATCATGCAGAAAACCATGAAATTCCAAAAGGtctacatactttttcttgcctCTGTATAAACCAAAACTCATATACACGCTGTTCTCAGTCGACAGTTGTctaaaataacttttacatttatttttggcaGATTTTCCACAGTAAAATGCCCCTAGTCAGAGATATGGATCACCAGGCCACAGAAGCAGTGAGTGACTGTGTGAATAAAAAGCACCGGAGGCGAATAAAGTCCTGAACTAAAGCAGATATCTGCAGAGCGTAGCAGCACTTAGCCTAGCAGCTAACCTAATTACCCTACACTTACCCTACTAACTCTACCTGGAGCTCATCTGTGTGTGAATATCAGGTGATTTTTATCACACAGAGCTCCAGTGCTGGTTGCATTAACAGCATTAACACTGTACACACTCTTTACAGTTTTTTCAGTAGATAGTAACTAACTGATTGATGTTAGCATGGAACAGCCATACAGTGTGATCTAATCTTAGCAGCTCGGGGGTTAAACTGGAGTGCAGAAGCATCAGTTGGTCTCTGAGGTAAATAGAGTTTACAAAAATGGATAGAAATGTAAATGGTAAATACATTAACTTCACTTTTACTGCTGGGGCATTAAATATCTATCCTAAACTTACTTAATAATAGGTACTTACTTAATAATTGGTATTTTAAAGagttagattttttaaattaaatattagtggtgtgaactgtatttatttgaccaatattctgtgatttataaaaaaaatcataaataaatgctggtatttccctgtattttaTGGTAGggggacagtaataatactGCAGTGAGTTTTAAGACTGGCAGATTAGATACTgctttactgtattataatttaatctcagagtatatttgattttttttttaaacgataaTATTGCAATATGCTGAGTTACCAAGTTTTAAGAAAAGTAATCTACCTTAATCTACTAATCTTAAAAGCGACGCTGTGTTATATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117592 lncRNA downstream 44169 41147486 ~ 41147967 (-) True G87307
TU117590 lncRNA downstream 52283 41137867 ~ 41139853 (-) True G87305
TU117586 lncRNA downstream 70369 41121039 ~ 41121767 (-) True G87301
TU117550 lncRNA downstream 200519 40990768 ~ 40991617 (-) True G87269
TU117553 lncRNA downstream 226014 40909646 ~ 40966122 (-) True G87271
TU117636 lncRNA upstream 121578 41315760 ~ 41318901 (-) True G87343
TU117637 lncRNA upstream 122501 41316683 ~ 41320403 (-) False G87343
TU117640 lncRNA upstream 122501 41316683 ~ 41320973 (-) False G87343
TU117635 lncRNA upstream 125993 41320175 ~ 41320973 (-) False G87343
TU117641 lncRNA upstream 125993 41320175 ~ 41325043 (-) False G87343
XM_022673314.1 mRNA downstream 40864 41107720 ~ 41151272 (-) True gpr137c
XM_022672516.1 mRNA downstream 108528 41026870 ~ 41083608 (-) True wdhd1
XM_022673309.1 mRNA downstream 168490 40994368 ~ 41023646 (-) True gch1
XM_022673303.1 mRNA downstream 333672 40844960 ~ 40858464 (-) True gnpnat1
XM_007233654.3 mRNA downstream 421635 40763840 ~ 40770501 (-) False LOC103044865
XM_007241976.3 mRNA upstream 39663 41233845 ~ 41252428 (-) True LOC103035710
XM_022673320.1 mRNA upstream 154673 41348855 ~ 41359462 (-) True rtraf
XM_022673317.1 mRNA upstream 268154 41462336 ~ 41470921 (-) True LOC103044494
XM_015603470.2 mRNA upstream 268154 41462336 ~ 41470921 (-) False LOC103044494
XM_015603469.2 mRNA upstream 268154 41462336 ~ 41470915 (-) False LOC103044494
TU117264 other downstream 421665 40764092 ~ 40770471 (-) False LOC103044865
TU117171 other downstream 655802 40533368 ~ 40536334 (-) True LOC111193261
TU116404 other downstream 3123084 37982874 ~ 38069052 (-) True G86432
XR_001518670.2 other downstream 4090555 36591633 ~ 37101581 (-) False nrxn3
TU117804 other upstream 601353 41795535 ~ 41804888 (-) False LOC103040189

Expression Profile