RNA id: TU17026


Basic Information

Item Value
RNA id TU17026
length 362
lncRNA type inter_gene
GC content 0.49
exon number 3
gene id G12665
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 22825865 ~ 22903738 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ggatggagctgctcaaCCATAgaaagGTCAGTTCCTACAGTTGCTGAGGGTTTGgtggtttggtgtttggtggatcTGTAATGTGGAGAGCTGTGTAGGAGCCGAGTGGCCGTATCTCAACCCGTCGCCGCCTCCAGAGCCCAAGATGGAGTAAAGACCCGCCTCCGGAGATCAAAGagGTTCCTAATGCAGTCCTCTGGGTCTTTCAGCTGGACAGCATTTCTCTTCTCTCGTCTTTCAGTTTCGCTCATGATGGATATGTCTAATGCTTTTGACCTGGATTACCTGTCACaggtgtcatgtgactgaggCCTGAATCACACGTGAGCTTTTGGAAAACACTGTAAAAGGtagataaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17014 lncRNA upstream 44742 22780841 ~ 22781123 (+) True G12655
TU16993 lncRNA upstream 100303 22725340 ~ 22725562 (+) True G12634
TU16973 lncRNA upstream 101003 22683605 ~ 22724862 (+) True G12614
TU16969 lncRNA upstream 145623 22679981 ~ 22680242 (+) True G12611
TU16960 lncRNA upstream 155646 22669919 ~ 22670219 (+) True G12602
TU17073 lncRNA downstream 17840 22921578 ~ 22921856 (+) True G12710
TU17344 lncRNA downstream 78442 22982180 ~ 22982379 (+) True G12907
TU17388 lncRNA downstream 187894 23091632 ~ 23091832 (+) True G12950
TU17391 lncRNA downstream 189006 23092744 ~ 23093164 (+) True G12953
TU17420 lncRNA downstream 304154 23207892 ~ 23209292 (+) True G12977
XM_022675183.1 mRNA upstream 211356 22533679 ~ 22614509 (+) False LOC103038567
XM_022675203.1 mRNA downstream 244273 23148011 ~ 23500229 (+) True LOC103034742
XM_022675217.1 mRNA downstream 652979 23556717 ~ 23637004 (+) False cbl
XM_022675213.1 mRNA downstream 652980 23556718 ~ 23638212 (+) True cbl
XM_007258871.3 mRNA downstream 841446 23745184 ~ 23750130 (+) True rnf26
XM_022675324.1 mRNA downstream 992754 23896492 ~ 23909676 (+) True LOC103047782
TU16886 other upstream 313229 22473652 ~ 22512636 (+) False oaf
TU16874 other upstream 440893 22329719 ~ 22384972 (+) False spa17
TU16873 other upstream 484352 22329719 ~ 22341513 (+) False spa17
TU16611 other upstream 1362216 21459850 ~ 21463649 (+) True G12362
trnan-guu other upstream 1849588 20976204 ~ 20976277 (+) True trnan-guu
TU17542 other downstream 950260 23853998 ~ 23855353 (+) True G13067
TU17745 other downstream 1810613 24714351 ~ 24717226 (+) False ccdc9
TU17747 other downstream 1812152 24715890 ~ 24717226 (+) False ccdc9
TU17784 other downstream 1952195 24855933 ~ 24857022 (+) True G13237
TU18064 other downstream 2148775 25052513 ~ 25056103 (+) True G13445

Expression Profile