RNA id: XM_007231431.3


Basic Information

Item Value
RNA id XM_007231431.3
length 2215
RNA type mRNA
GC content 0.47
exon number 10
gene id LOC103030893
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 20951343 ~ 20960236 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTGGGTGAAGCTGTTCTGAGGTGGGTGTTGGAGCGTGTGAAGTTTTTCCGGTTGGAGACGTGGCTCTGCTGTTACACTCTGTTAGCGGAGAGTCAGCCTGTGCGACTCTGTATGAAGCCTAAAACACCGATACTGCTGCCTGCGTGATTTATTAAAGACCGAGAGAGCGCGGCTGTGGATTTCAGTACCTCGGGACGGAGCTAAAATGGTGCTCttggcagcagcagtgtgcaccaAGGCTGGAAAAGCCATAGTGTCACGGCAGTTCGTAGAGATGACGCGCACCCGCATTGAAGGTCTTCTGGCTGCTTTTCCTAAACTAATGAGCACAGGGAAGCAGCACACCTTCGTTGAGACAGACAGCGTGCGCTATGTCTACCAGCCTATGGAGAAACTCTACATGGTCCTTGTCACCACAAAGAACAGCAACATTCTGGAGGACTTGGAGACATTGCGGCTTTTCTCCCGTGTGATTCCTGAATATTGTCGTGTGCTGGAGGAATCAGAGATCTCGGAGCACTGCTTTGATATAATATTTGCATTTGATGAGATTGTTGCTCTGGGCTACAGGGAAAATGTCAATCTGGCCCAGATTCGTACCTTCACTGAGATGGACTCGCATGAGGAAAAGGTTTTCCGTGCAGTCAGAGAGACTCAAGAACGAGAAGCAAATGCAGAGATGAGGCGGAAGGCCAAAGAGTTGCAGCAGGCAAGACGGGATGCTGAGCGTGCAGGCAAAAAAGCACCTGGCTTTGGAGGTTTTGGAAGTACTGGAATGAGCGGTGTCAGTCCAGCCACCATCATCACGGAGTCAATGATGGAACCAGAGAAGCCAAAAATGGCTCCAGCCCCAGTTAGGCCAAGCGGTCCTAGTAAAGCCCTGAAGCTGGGTGCCAAAGGAAAGGAGGTTGATAACTTCGTTGATAAACTGAAGTCCGAGGGGGAAAACATCATCATGCACAGTGCAGGGAAGAAACAATCCGAGGCATCTAAAGTCCTTCAACCTCCAGTGAACACAGAAAGTGTGCATCTGAGGATGGAGGAGAAGATATCGCTCACATGTGGACGAGATGGTGGACTGCAGAACATGGAGATCTTGGGCATGATAACCCTGAGGGTGTCGGATGACAAGAATGGACGTATCCGCTTGCACATTAACAACAATGACAAGAAAGGAGTCCAACTGCAGACCCATCCCAATGTGGATAAGAAGCTCTTCACTGCAGAGTCCTTGATTGGTCTGAAAAACCCAGAGAAGTCTTTTCCACTCAACAGTGATGTGGGTGTGCTGAAGTGGAGGCTACAGACCACAGACGAGTCCCTCATTCCTTTAACCAtaaactgcTGGCCCTCAGAGAGTGGCAGTAACTGCGATGTCAACATTGAGTACGAGCTCCAGGATGAAGGGCTTGAACTTAATGACGTGATCATTACCATTCCTGTGCCGTCTGGAGTTGGTGCTCCTGTCATTGGAGACATTGATGGCGAGTATCGCCACGACAGCAGGAAAAACATCCTGGAATGGTGCCTGCCTGTTATAGATGAAAATAACAAAAGTGGAAGCCTGGAGTTCAGCATAGCCGGGAAACCCAACGACTTCTTCCCAGTTAACGTCTCATTTGTGTCTAGACGCTGCTACAGCGACATTCAGGTGGCCAAAGTGGTCCAGGTAGAAGAGGGAAGCCCAGTGAAATATTCCTCTGAGACTTCATTTGTCGTGGACAAGTACGAGATCCTCTAAAGACTCctaaaagaaatatttttctAGCCTGCCTGCCTATCTGtataaaagtttggacaccgtACACCAGACTCTCAAAATCCGACACAGTGGCGTGCAGTTTTGgtgtatttatatgtttgtaCGGCAACagaaattatatatgtttatatgaaaCTTAAAGGTAAAATGAGCAGCATCTACCATGAAGGCAGATGAGCCTGGTGCATTGTGACCAAGGCCACAGAGAAGTCATCATAACACATCATCTTACAGCTTACTACAAAACTTGGACCTATGAGTCTTCATGACCTTCTACATaaatgaacagaggagcttGACAGCACTTTTGTATTATACTTTCAGTTTTTAGTTCCAAGATTTGCAACTAAACAGAGCCAGTCATTCTCACATATCCAATGTATTGTACTCCGATTGAGTTTTGCTTTGTTTTCctgaaattaatcaaataagACCAGAAAGTAATGTTTTGA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum biological_process
GO:0030126 COPI vesicle coat cellular_component
GO:0030131 clathrin adaptor complex cellular_component

KEGG:

id description
K20471 COPD, ARCN1, RET2; coatomer subunit delta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16239 lncRNA upstream 183944 20727543 ~ 20767399 (+) True G12038
TU16240 lncRNA upstream 196063 20728643 ~ 20755280 (+) True G12039
TU16235 lncRNA upstream 240665 20671034 ~ 20710678 (+) True G12034
TU16228 lncRNA upstream 331366 20562773 ~ 20619977 (+) True G12027
TU16224 lncRNA upstream 421906 20529047 ~ 20529437 (+) True G12023
TU16389 lncRNA downstream 31634 20991870 ~ 20992084 (+) True G12165
XR_002650607.1 lncRNA downstream 96517 21056753 ~ 21162746 (+) True LOC103030577
TU16398 lncRNA downstream 96628 21056864 ~ 21089666 (+) False LOC103030577
TU16418 lncRNA downstream 153619 21113855 ~ 21116020 (+) True G12187
TU16477 lncRNA downstream 210869 21171105 ~ 21171318 (+) True G12242
XM_015600779.2 mRNA upstream 42536 20902276 ~ 20908807 (+) True pih1d2
XM_022674875.1 mRNA upstream 50496 20887489 ~ 20900847 (+) False tmprss5
XM_022674864.1 mRNA upstream 50496 20889003 ~ 20900847 (+) True tmprss5
XM_022674881.1 mRNA upstream 64876 20884548 ~ 20886467 (+) True LOC111193555
XM_022674888.1 mRNA upstream 72312 20876909 ~ 20879031 (+) True LOC111193556
XM_022674932.1 mRNA downstream 6036 20966272 ~ 20990064 (+) True LOC103033739
XM_022674940.1 mRNA downstream 33870 20994106 ~ 21053855 (+) True LOC103033418
XM_007229377.3 mRNA downstream 584120 21544356 ~ 21549087 (+) True nkapd1
XM_007229378.3 mRNA downstream 614714 21574950 ~ 21597352 (+) True LOC103031614
XM_022677900.1 mRNA downstream 804722 21764958 ~ 21827382 (+) True LOC111194279
TU15744 other upstream 1527279 19412844 ~ 19424064 (+) False LOC103043893
XR_002650987.1 other upstream 3811564 17139425 ~ 17139779 (+) False LOC111194200
TU14698 other upstream 4990965 15952846 ~ 15960378 (+) True G10879
TU14653 other upstream 5182100 15758762 ~ 15769243 (+) True G10838
TU16384 other downstream 2813 20963049 ~ 20972094 (+) False LOC103033739
TU16383 other downstream 6052 20966288 ~ 20972094 (+) False LOC103033739
trnan-guu other downstream 15968 20976204 ~ 20976277 (+) True trnan-guu
TU16611 other downstream 499614 21459850 ~ 21463649 (+) True G12362
TU16873 other downstream 1369483 22329719 ~ 22341513 (+) False spa17

Expression Profile