RNA id: XM_022674940.1


Basic Information

Item Value
RNA id XM_022674940.1
length 2608
RNA type mRNA
GC content 0.53
exon number 14
gene id LOC103033418
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 20994106 ~ 21053855 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCATTGTAGCAGTGGGGAGGGGATGAGAGCTCGGTCAGCTGAAACACTCTGGTGTCTCTAATGTCTCTCAGTCCCGCTGCGCTGCGCTCTCAGAGATCTCCGGCTCTGTATGGGAGGCTGAGGGagaagctgaggctggagcCGGAGCTGAGAGAGAAGTATGGCCGCGAAGGAAGAGCTGTACGCCCGGATCATCCCCCGCAGACTCCGCCACGGCCGGGCCAGCAGCGCCGCCAAGCAGGGCTCTCCGCTGGACGTGCTGCTGTCGATGGGCTTCCCCCAGAGCAGAGCGTTAAAGGCGCTGGTTTCTACAGGAGGCAGGAGTGTGCAGCTGGCATGTGACTGGCTCTTTTCTCACGTAGATGACCCCTTCTTGGACGACCCCTTACCCAGAGAGTATGTGCTATATCTGCGCCCCAGCGGCCCCCTTCAGAACCAGCTCAACCACTTCTGGCAGCAGTCCAGGCTGACCTGCGGCAAGAACAAAGCCCACAACATATTCCCCCACATCACGCTCTGCCAGTTCTTCATGTGTGCAGACAGTAaggtggaggctctgtgtggaGCTCTGCAGTCCACAGTGATCCAGTGGAGAGGACGCTTCCCCAGCCCCCTGCCTCTCGAGCTCTACACCTCCGCCAACTTCATCGGCCTCTTTGTGGAGGAGCAGGTGGCCGAGACGTTGAAGAAGTTCGCCTCAGACTTCGCTGCAGAAGCTGCTTCTAAAGCAGATGTTCATGTGGAGCCCCATAAGAAGCAGCTGCACGTGACTCTAGCCTACCACTTTCCCAGCTGTCATTTGGCTTCACTGGAAAAGCTGGCGAGAGGAATTGAGGTCAAGCTGGGCTGCGATTGGCTCGCCGTCCTTTTCTCTCGGGACATTAGATTTGCAAATCATGAGACTCTGAGGGTGATGTACCCCTATGTTCCTCAGAAtgaggatgagctggagcttgtACCAGGTGACTTTATCTTCACATCACCAGTGGAGCAGATGAGCACCAGTGAGGGCTGGGTTTATGGCACTTCTCTAAACACAGGGATTTCTGGGCTTCTGCCTGAAAATTATGTGGGTCGGGCTGATGAATGCGACACATGGGTCTTCCACGGGTCGCACTCATTCTTCAGTGCCTCACCTTCAGAAAAAAGCAACAAAGAGAGCAGAACATTGGATGGGCTACTCAGCATTCAGTGCCTGGATAACTCAAGACCAGGGGATTCATCCATCCTGAGTTTGGTCTGCCAACCTATGCAGgtaCTCCGAGTCAACAGCCACTCTCGCTCTCCTAAAAGGACGCTCTTTGTGTGTCGCCATGGAGAGAGGATGGACGTGGTGTTTGGGAAACACTGGCTCTCACAGTGCTCTGATGCTAAAGgCAGATATGTGCGAACTAACCTGAATATGCCTCCATTCCTCCCTGCCTGGGGTGGAGGACACAGGGATTATGACATGGACGCTCCTATAACCGTGTTTGGAACCACTCAGGCCAGAACTGTGGGTGAGGCTTTACTGGAGAGCAACACTGCCATTGACTTCATCTATTCCTCGCCGAGCCTCCGCTGCGTTCAGACAGCCCACGAGATCCTCAAAGgTATGCAGCTGGATGGAAAGCTGAAGATACGAGTGGAGCCAGGCCTGTTTGAATGGACCAAATGGGTGTCAGGGTCTTCTCTACCCTCATGGATCTCTCCCTCGGACCTTGCTGCAGCCAACCTCAGTGTGGACACAACCTACAGACCTCACATAGCCATTACTAAACTAAGCGTGGCCGAGTCCTACGACACCTACATGAGCCGGAGCTACAAAGTGACCAAAGACATCCTGTCAGACTGCAAAAACAAAgGTAATAATGTTCTGATAGTGGGTCATGCATCATCTCTGGAGGCCTGCACCCGCCAGCTCCAGGGCCAGACCCTGCGCAACTCCAAAGACTTCGTCCAAGTAGTGCGGAAGaTCCCGTATCTGggtatgtgtgcatgtgaggaGCAGGATTCAAACTCGTGGAAGCTTGTGGACCCGCCCATCCTCCCCCTCACCCACGGACCCAATCACAGCTTCAGCTGGAGAGAGACGCTACAGCAGGAATGACCCTCACTCACCCGTCCGTCAGCGGCTCTGAGTGACggacacctcacacacactggaAGCATGCGGGCCATGTGCTGGCCGCTTTGCAGAATGGACCCAGGCTGTTCGCGCCACTTTGCGagctaaaaaaacactgacaggactttttattttttctaaaagttTTTTAGGCCATATTTTATGTTTACACGTGGAATGGAGAATGGTGGTTTGATGGACAGATGTTGTGTAGATGAGTAAAGTGGTTGAATTGAGAGGGGGACACACTGCAGGCTAATCTCAGGGCATTGGCAATCACTCTTTAACAGGTGAAGCACAGGTCTAACGGCACAATCACCACAATTAACTTGTTTTGTGGACAGAATAGCATCTCTAACCTACAGTACAAAGCAGCAGGTGTATTGTAGCTGCTGTGGTTATTAATATACAGCGCTATTGTACAGGtctggacaaaaaaataagagagcacttaaaaatgatgagtttctttgattttaccaaattgaaaacctctggaat

Function

GO: NA

KEGG:

id description
K18993 UBASH3, STS; ubiquitin-associated and SH3 domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16389 lncRNA upstream 2022 20991870 ~ 20992084 (+) True G12165
TU16239 lncRNA upstream 226707 20727543 ~ 20767399 (+) True G12038
TU16240 lncRNA upstream 238826 20728643 ~ 20755280 (+) True G12039
TU16235 lncRNA upstream 283428 20671034 ~ 20710678 (+) True G12034
TU16228 lncRNA upstream 374129 20562773 ~ 20619977 (+) True G12027
XR_002650607.1 lncRNA downstream 2898 21056753 ~ 21162746 (+) True LOC103030577
TU16398 lncRNA downstream 3009 21056864 ~ 21089666 (+) False LOC103030577
TU16418 lncRNA downstream 60000 21113855 ~ 21116020 (+) True G12187
TU16477 lncRNA downstream 117250 21171105 ~ 21171318 (+) True G12242
TU16536 lncRNA downstream 210072 21263927 ~ 21309318 (+) True G12297
XM_022674932.1 mRNA upstream 4042 20966272 ~ 20990064 (+) True LOC103033739
XM_007231431.3 mRNA upstream 33870 20951343 ~ 20960236 (+) True LOC103030893
XM_022674920.1 mRNA upstream 33870 20952512 ~ 20960236 (+) False LOC103030893
XM_015600779.2 mRNA upstream 85299 20902276 ~ 20908807 (+) True pih1d2
XM_022674875.1 mRNA upstream 93259 20887489 ~ 20900847 (+) False tmprss5
XM_007229377.3 mRNA downstream 490501 21544356 ~ 21549087 (+) True nkapd1
XM_007229378.3 mRNA downstream 521095 21574950 ~ 21597352 (+) True LOC103031614
XM_022677900.1 mRNA downstream 711103 21764958 ~ 21827382 (+) True LOC111194279
XM_022675083.1 mRNA downstream 790910 21844765 ~ 21905395 (+) True ttc12
XM_022675089.1 mRNA downstream 797181 21851036 ~ 21905395 (+) False ttc12
trnan-guu other upstream 17829 20976204 ~ 20976277 (+) True trnan-guu
TU16384 other upstream 22012 20963049 ~ 20972094 (+) False LOC103033739
TU16383 other upstream 22012 20966288 ~ 20972094 (+) False LOC103033739
TU15744 other upstream 1570042 19412844 ~ 19424064 (+) False LOC103043893
XR_002650987.1 other upstream 3854327 17139425 ~ 17139779 (+) False LOC111194200
TU16611 other downstream 405995 21459850 ~ 21463649 (+) True G12362
TU16873 other downstream 1275864 22329719 ~ 22341513 (+) False spa17
TU16874 other downstream 1275864 22329719 ~ 22384972 (+) False spa17
TU16886 other downstream 1419797 22473652 ~ 22512636 (+) False oaf
TU17542 other downstream 2800143 23853998 ~ 23855353 (+) True G13067

Expression Profile