RNA id: TCONS_00000955


Basic Information

Item Value
RNA id TCONS_00000955
length 1697
RNA type mRNA
GC content 0.40
exon number 11
gene id XLOC_000552
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 44826320 ~ 44835738 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TtttttgcaagaaaaaaaagaacactCCTCTGATATTTTAAGAGGATCTTCAATAAGAAACCTTAACAGTGGGAATCTAAATTGAGCGTTTCATGTTGTGAAGTGGTGGCTAATGATGTTTTCTAGTTTCCCGCTCTGAAAACGAATCCGCTGCTGTCATTTGTCGTCTATATTGACCATTACAGCCGTTTGAAGTATTTAAGTCTCTTATCATATTGAGCCGAAGATGAAGGACCGACTGGAACAACTAAAATCGAAGTCGGATCAGACTGCCGATGATGTGGAAATTCCGATGGAAAATAAAGAATTCATGGATGAGTTCTTTGCTCAGATTGAAGAAATCCGCACCAGTATTGACAAGATTGATGAAAATGTAGTGGAGATCAAGCGACTGTATTCTGTTATTCTCTCTGCGCCAACATCAGAGCAGAAGACACAGGATGAATTGGAAGCAGTTACCAATGAGATAAAGAAACTGGCCAACAATGCTCGCAATAAACTAAAAAGCATTGAGCAGAATTTGGCAGCTAACACCGAGGAGAGGGTTTCAGCTGATATGCGGATAAAAAAATCTCAGCATGCCATTCTTGCGAAGAAGTTTGTAGAGGTGATGACCAAATACAATGAAGCCCAAGTGGAGTTTAGAGAGAAGAGCAAAGGACGCATTCAAAGACAACTGGAGATCACTGGAAAAGCCACTACTGATGAGGAACTGGAGGAAATGCTGGATGGAGGGAACGCTGCGGTTTTCACAGCAGGAATTATGGATTCTGGAATATCTAAACAGGCCCTAAGTGAGATCGAGGCAAGACACAAAGATATCATGCGCCTGGAGAGCAGCATAAAAGAGCTTCATGACATGTTTGTGGACATCGCGGTGCTGGTGGAGAATCAGGGAAGCATGATTGACAGGATTGAGAGCAACATGGACCAGTCGGTGGGTTTTGTGGAAAGAGCTGTGGCTGACACTAAAAAAGCTGCCAAGTTCCAACAGGAAGCACGCAGGAAAAAGATGATGATCATGTTGTGTTGCACAATTCTTGCGGTCATCGGAGGCTCTCTGGTCTACAGCTGGCTGACATAGACTACAAgAGGAAGACTTTGTCTACTCTTACAAGTTCACAGTGTCTATCAACAAATCAAGAGGAGCATCCTCGTGCCGATGAACAATAAGCATTCCCAAACACACAACATGTTTTCCATTGCTTGTTTATCTCATTTTCCCATCTCTATATTTGTCTTTTACGATTTTCCTGTCTCATCATTTGGCCTTGCGTTATTAGAAGCATCACAGTAAAATGTGGTGTGCAAGCTATCTTTTAGGGTTGTGGTAtaaatatttgcttttatttttagttgGTTTTGGATATAGCCTGTATGAggataacatttttgtttttcgaGGCCTCATTTTTATAACTGACAAGTGAAACATCCTGATGAATACTGGTGCCCGCTTACATTGTGTCTACAGTGTACAAAATTTCTgataattaacagtttctgtaatttgggattcacaagtgttttctgtttatttatggttgtgaattgcattataggatgttgatctctgctctgtccacttttgatgttgaaaattcaactctactgtTTGACAAAGTGgctttcattgacatttttgtagtttgaaataatataatctataagaaataatgtatagagaaatataagtc

Function

GO:

id name namespace
GO:0022401 negative adaptation of signaling pathway biological_process
GO:0099643 signal release from synapse biological_process
GO:0050877 nervous system process biological_process
GO:0016079 synaptic vesicle exocytosis biological_process
GO:0048167 regulation of synaptic plasticity biological_process
GO:0045744 negative regulation of G protein-coupled receptor signaling pathway biological_process
GO:0002029 desensitization of G protein-coupled receptor signaling pathway biological_process
GO:0002031 G protein-coupled receptor internalization biological_process
GO:0009314 response to radiation biological_process
GO:0036368 cone photoresponse recovery biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0099177 regulation of trans-synaptic signaling biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0031623 receptor internalization biological_process
GO:0043112 receptor metabolic process biological_process
GO:0017156 calcium-ion regulated exocytosis biological_process
GO:0048880 sensory system development biological_process
GO:0009416 response to light stimulus biological_process
GO:0023058 adaptation of signaling pathway biological_process
GO:0023061 signal release biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0003008 system process biological_process
GO:0050804 modulation of chemical synaptic transmission biological_process
GO:0050806 positive regulation of synaptic transmission biological_process
GO:0001654 eye development biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0150063 visual system development biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0030133 transport vesicle cellular_component
GO:0043005 neuron projection cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0031045 dense core granule cellular_component
GO:0045202 synapse cellular_component
GO:0012506 vesicle membrane cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0098793 presynapse cellular_component
GO:0030658 transport vesicle membrane cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0017075 syntaxin-1 binding molecular_function
GO:0000149 SNARE binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function
GO:0019905 syntaxin binding molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000146962

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000947 lncRNA upstream 69356 44753977 ~ 44757011 (+) True XLOC_000547
TCONS_00003121 lncRNA upstream 172399 44647908 ~ 44653968 (+) True XLOC_000545
TCONS_00003120 lncRNA upstream 255498 44567513 ~ 44570869 (+) True XLOC_000542
TCONS_00003119 lncRNA upstream 286229 44523368 ~ 44540138 (+) False XLOC_000541
TCONS_00000912 lncRNA upstream 601075 44222519 ~ 44225292 (+) True XLOC_000523
TCONS_00000962 lncRNA downstream 78098 44913836 ~ 44914405 (+) False XLOC_000554
TCONS_00000965 lncRNA downstream 105894 44941632 ~ 44942285 (+) True XLOC_000555
TCONS_00000968 lncRNA downstream 132724 44968462 ~ 44971240 (+) False XLOC_000557
TCONS_00000969 lncRNA downstream 134831 44970569 ~ 44972926 (+) True XLOC_000557
TCONS_00000974 lncRNA downstream 169168 45004906 ~ 45008973 (+) False XLOC_000559
TCONS_00000953 mRNA upstream 3296 44814322 ~ 44823071 (+) True XLOC_000551
TCONS_00000951 mRNA upstream 25188 44800298 ~ 44801179 (+) False XLOC_000550
TCONS_00000952 mRNA upstream 25205 44800392 ~ 44801162 (+) True XLOC_000550
TCONS_00000950 mRNA upstream 42809 44780849 ~ 44783558 (+) True XLOC_000549
TCONS_00000948 mRNA upstream 56313 44767657 ~ 44770054 (+) False XLOC_000548
TCONS_00000957 mRNA downstream 2968 44838706 ~ 44869972 (+) False XLOC_000553
TCONS_00000958 mRNA downstream 2976 44838714 ~ 44869972 (+) False XLOC_000553
TCONS_00000959 mRNA downstream 16759 44852497 ~ 44869972 (+) True XLOC_000553
TCONS_00000960 mRNA downstream 70779 44906517 ~ 44924254 (+) False XLOC_000554
TCONS_00000961 mRNA downstream 75667 44911405 ~ 44922106 (+) False XLOC_000554
TCONS_00000949 other upstream 56312 44769034 ~ 44770055 (+) True XLOC_000548
TCONS_00000941 other upstream 235986 44590267 ~ 44590381 (+) True XLOC_000544
TCONS_00000938 other upstream 261021 44559451 ~ 44565346 (+) True XLOC_000541
TCONS_00000933 other upstream 319114 44507134 ~ 44507253 (+) True XLOC_000540
TCONS_00000911 other upstream 598913 44222222 ~ 44227454 (+) False XLOC_000523
TCONS_00000970 other downstream 148087 44983825 ~ 44989546 (+) False XLOC_000558
TCONS_00000971 other downstream 151258 44986996 ~ 44997770 (+) False XLOC_000558
TCONS_00000975 other downstream 171665 45007403 ~ 45009616 (+) True XLOC_000559
TCONS_00000982 other downstream 334308 45170046 ~ 45170652 (+) True XLOC_000563
TCONS_00000997 other downstream 932678 45768416 ~ 45768530 (+) True XLOC_000573

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000049_07779943_07782625.mRNA True 2102 mRNA 0.39 10 CI01000049 7778699 ~ 7782625 (-)