RNA id: XM_007256661.3


Basic Information

Item Value
RNA id XM_007256661.3
length 4194
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC103033561
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 60128047 ~ 60145920 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGGCGGGCGCGGTGGTGCAGCGGGTCGTCGGCCTGGGCAGATATCTCCAGGACCCCTGCCTGGTGGCCAGGTTTCAGCAGCTCTGCGGGGTTAAAGGAACGTTTCCGCGGAAATCTCCGGGAACTGAGGAGCCTAACGGAGACTTCAGCAGGCCGGGACCGGGCACCACAGACCCCCGGCTCAGGAAGACCGAGACCCCCCCGTACGACTCTCTGAACGGGGCAGCACCCGAGTCCGCTCCCACGGACACCCACCCCGATGGACCTGCAGCAGCAGGAGACTCCAGGGGTCCCAAGGGGAGAGTGAAGCCCCTCCGTAAGAACTCTCTGACTGGAGATGTTGGACAGGAGTTCATCATCGAGAACAAGTTCCTGTTCTATCTCTTCACCATCGGCACCGAGCTGGGCAACGAGATGTTCTTCATCGTCTTCTTCCCCTTCCTGATGTGGAACGTGGACGCCTATGTCAGCCGGCAGGTCATCCTGGTCTGGGTCTGGGTGCTCTTCTTCGGACAGTCCACCAAAGACCTGGTGGGGTGGACGCGGCCCGCCTCCCCGCCCGTGGTCAAAGTGGAGGTCTTCTACATATTCGAGTACAGCATGCCTTCTGTACACGCCATGACCGGGACCTCCGTCCCCTTCTGCCTCTTTCTGCTCACCTACGACCGGTGGGAGtaCCCTTTCCTGTTTGGACTGAGTGTGGCCATATGCTGGAGCTTCCTGGTATGCATAAGCAGAATCTACATGGGCATGCATTCTGTTTTGGAGGTGATCATGGGCTTCCTCTACAGCTTGTTAATCCTGGCTGCCTTTCTTCCTGTGTTTGACGACATTGACACATTCTACCTGTCTAGCAGGTATGCGCCTCTGGTCATCCTGCTGCTGCACATCGGCCTGTCGCTCGTGGCTTTCTCTCTGGACTCCTGGAGCACGTCTCGAGGGGACACGGCTCAGGCTTTAGCCACTGGAGCTGGAGGTGCTTTGGGCTGCCATCTCAACCACCAGCTGGGTCTGCAGAATGACCCTCCGCTGTCCTCCCTGCCCCTCAAGATGCCCACTATTGACTCTTCGTTGCTAGGACGCTCATTTCTGCGGCTCCTTGTGGGCGTGGCTGTGCTGCTAGCTGTGCGTGCGGTCATGAAGGCCGTGGCTATCCCACTAGCTTGCAGAATGTTTGGCGTTCCCTGTGACGACGTGCGCAAGGCTAGACAGAATCCTCATGTGGAGCTGACTTACCGCTTCCTGGTGTACGGCACGGTGGCCGTCTGCTGTGCCTGCCTAGTGCCCCTGCTCTTCAACCACCTGAACCTTTCCTGAAGAATCTGCAGCTGAAGTTCTGCCTCTGTGTAGGCCAGTAATACATCATCGTCTGCCACTGCTCTCTATCCAAATAAGGCTTGAACTTTTCCAATTTGATCAGAATCcttatttttatccattttattctttttatgtttGGTTGTCTTATCACTGTTGTTTTAGTCCTAAATCTACAGAATTTTCATTCTGTCTTTGGTTTTGCCTAAACATGGCATGCATAACTCTATATTGGGAATGAGGGACTGGTCATCAGCTGAGGATTTAATCTCCATTGAAGAACAATGAAGTAGTCCTGACCTTTAGAGTAAGTTGTGCAGTATTTGTTAAGCTGAACTACAGAACAGCACCGTCTGTGTCTCAGAGATGTAACTGTAAGAGAGTTTGAATGGAACTATGTAATGTTTGGAACTAGATCTCCACAATATATAGTTTTAGCATCGTCATCACAATTTACACATACGCAAGAGTCACATTGCAGGAAATGCAATGTTTTCTGCAatgtaaaaatgacattttaaagctttttgaaGCTTGATACAAAAACAAATCACACATTTCAGATTTTACATAACAATATCTAGCAGATTACAGATGGTATCTACCCAATACCTTTTACAGTATGTTATGCCAATCATGGATATTCatattgcattattaatatcatgttGGATTGTTGACTTCTTGCCAAATTTGGTggcaatattttccaatatcgtgcagccctattttgaacattttaaaacctgCTCTGTTAACAGCATTCAACTAAGTCATGTGTGGATCGTGTTTGTTTGATCTCCACCCCTTCTTCTCAGCAGCCATTCTACCTACACCCATCCTGCACACCCAtcctgttttctctctgcttCCTAACAATATGTTGGCTCATTTCCCACTATATTGAGCATGAGTCTTGAGCCTTTttggtgaatgtgtgtgtgtacacaaacCCAGCGCTGATGGGCTTTGAACTTTCCCTCAAAGCTGAGCTCAGGTTGTATCCTAGTCCTaggttatatccaaacagcccAGTACAGAGACAGGGATAGAGAGATTGGAGGAACAGAGCTTGTTCCAGGCTACGTGTGTGGCAGTACTGGGTGGTCTTTTTAAGGGAGTTGGCACAGGGCTGCCTAAACTCCGGTCTTATTTCCACTGTTGGCTTTACTTTGCAAGTAGTAAAGTTCTGAGGGAACAAGAGGAGAAGGTTTTCCTCTTTAAATGAATGACTGTCAAAGGGATTGCCACTCCTTTTGAGTGGGTAGATATGAATGCTAATTAACAAAccaacaaataatgaaaagtgATCTTCCAAAGATGAAAGGAAACTACATGTCATATTTcttttagttgttgtttttttttatttggtgtgAAAAGAGAAGTATTTTGTAACTATAGTTTTTGTTTGGTCCagtgaatttcacatttttataaaacGTATTAAAATGCACTCGTAGCTGACAGGTGAAGAATCTGCTTTGTTTGTCAGTTCATGGCGTTGTGAGGCTGTTGTGATGTTTAGCAGCTAGACAAAGACTGGGTGAGTACTGCATACTGCAGTGGCATATATCAAACGCTATCTCTCAATGTTGAAGGTGTAAATGTAGGCATAAAAATTCCAGGGAGTTGTAATCTAGACATTTAGATTTGCCAATGCTTGTGCTGAAGTAAACTACCGGTAATGTGTCCCAGTTAAATACCTAAGGCTGTGGAAGAGTCATTATCCAAGTGTCCCAGTCCATGTTTAAgtatgtgtttaattttttttttttttcattattttattgaatgaatgtctttctgtcttttaaattacagtaatacTTCAGCATTTCTCAACTTAATCTCTGTGGACTACATTTGTGATTGCTTACCCTTTGTGGACACTGGCATAGGCAAAATATCACAGATATTTGGGAGAAGATCTGGTAAAAGCCAGTCGGCTAGCAGCTTAGTCTAGCATTGGTATTAGCTTATAGTCTGGTTATGTGCAGCAACCCATTGtgtttagtgtaaaaaaaaaaaaaaaaaaagacttgcgATAGTGGGCTGGATGTATGTCAAATTTGATGGggaataaaagtaataaaggcCATTTTAGGGTTAAAACAGTGCTCCTATATATGAggaattttctttttattttttatatataatttggaGAATTCAGTATCATTTGGGAGAAAAAAGTTCAGGTTTGGAACACAGGGCCTGATCACAGCCATTCCTAATATGGGCATGTTGTTAGTTCTAGCACACATATTGGCTTCTCTTGAAAGAGGTTTCTCTTCAGAGAaatcacttttctttttcttttttccgttttttaTGATAACCAAACGCCAAAGTAGTATAGAAACAGTGCAGAGAGTTTAGATTGTAAAATGCTGGAGTACTCCTATAATACTGATTCAGATGTCTGTGTGGGTCTCTGATAGCTGGACTTTTCATATCTTGATCATATTTGAAAATCTCACaccattttttgtaaaatatctaCTTATTACATTCAACATCCAGGTAGTCCAGGTCTTACAGATAGATTTGAACAGTAAGATGTGTGGTAGATACAGGCTCGTAACTGACCTTCAGTAGGTCAGAGACTGATATGCTGCTGTTATTATGCACTGCTGTTAACATGGATGCTGTTAACATTGATCTAACCCAATGATCTTGAAGAGGAAAAACAAGAACTGTAATTTTGATCTAATACAGTCAGCAGTAGGAGAGAATACTGTAAAGTGACACTTGACGGTCAATGTGTTTTCAGTAGATTAAATCTTAACCTGCTTGTTTGGACTTCCACATGCTTGGTTGAGTACATCACTCTGTCTGTAAACTAgaccaaaataaaaactgtatctGAGTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39706 lncRNA downstream 36288 60074072 ~ 60091759 (-) True G29608
TU39646 lncRNA downstream 269708 59858066 ~ 59858339 (-) True G29563
TU39642 lncRNA downstream 275579 59852055 ~ 59852468 (-) True G29559
TU39584 lncRNA downstream 520201 59607175 ~ 59607846 (-) True G29509
TU39571 lncRNA downstream 549652 59576259 ~ 59578395 (-) False LOC111190079
TU39772 lncRNA upstream 205353 60351273 ~ 60352884 (-) False LOC103035785
TU39775 lncRNA upstream 209549 60355469 ~ 60355877 (-) False LOC103035785
TU39787 lncRNA upstream 238083 60384003 ~ 60384462 (-) True G29681
TU39791 lncRNA upstream 242060 60387980 ~ 60388361 (-) True G29684
TU39815 lncRNA upstream 249729 60395649 ~ 60396246 (-) True G29702
XM_007256660.3 mRNA downstream 4569 60097488 ~ 60123478 (-) False LOC103032801
XM_007256659.3 mRNA downstream 10485 60097488 ~ 60117562 (-) True LOC103032801
XM_007256657.2 mRNA downstream 68447 59882140 ~ 60059600 (-) True LOC103032183
XM_022663890.1 mRNA downstream 297156 59792576 ~ 59830891 (-) True LOC103031863
XM_015607686.2 mRNA downstream 423964 59700034 ~ 59704083 (-) True LOC107197813
XM_022663912.1 mRNA upstream 3477 60149397 ~ 60162066 (-) True LOC103034188
XM_007256662.3 mRNA upstream 17420 60163340 ~ 60177354 (-) True LOC103033873
XM_007256664.3 mRNA upstream 38774 60184694 ~ 60219056 (-) True LOC103034514
XM_007256667.3 mRNA upstream 162015 60307935 ~ 60311646 (-) True LOC103035477
XM_007256668.3 mRNA upstream 205352 60351272 ~ 60364743 (-) True LOC103035785
TU39539 other downstream 689749 59437600 ~ 59438298 (-) True G29478
TU39330 other downstream 1193258 58932963 ~ 58934789 (-) True G29317
TU39086 other downstream 1953343 58169321 ~ 58174704 (-) False LOC111189852
XR_452898.2 other downstream 3433922 56646027 ~ 56694125 (-) False LOC103031416
TU38322 other downstream 4311449 55815872 ~ 55816598 (-) True G28536
TU39714 other upstream 11618 60157538 ~ 60162024 (-) False LOC103034188
XR_002649735.1 other upstream 223126 60369046 ~ 60369614 (-) True LOC111191938
XR_002649101.1 other upstream 1687528 61833448 ~ 61887888 (-) False LOC103043586
TU40670 other upstream 3064361 63210281 ~ 63288108 (-) False fryl
TU40671 other upstream 3064361 63210281 ~ 63256634 (-) False fryl

Expression Profile