RNA id: TU6118


Basic Information

Item Value
RNA id TU6118
length 1722
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G4549
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 18063434 ~ 18065761 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGTTTCCCACTGCAGCCTCGTTTCTAATCTCTTCTCACAAGCACTGTAGTAGTGTGACCCGGATAAGCTCCGCCTCCAAATATGAACCTCCATAGCAATTGTTGCTAGGTTGGACAAGCTTtgctggcaaaaaaaaatccaccattTATCCCCTTGTGCCGTAACCATAATCTTACCTGTATTTAGATCAATATTTGTGCTTTAGTCCACTATAAgccatatttattaattaatttaatttgaatttgCCTCATTGGTGGCTGATACAGAGCATGCATATATTTTTGGTTATTTATTAAGATTCTTAAAGCACCAATCGTAGTAAGAGCCAGGCAGacaaacatggtaaacatgttaaacatggtgaagGTAGTTACATAAACACACTGTAGGGTTTAAGCATAGTCCTATAGACCATTCTTTCTtttcaatataaaataagtgCTGTGCCGTAATTTCTTAACATGCTTTATGACTATTTGGAGCGCTTGTCTGCTTTTTAGCAGCAGCACACTGAATTAATAACCAGTTCCAGTTCCATTGTAGCATAAGCTACTTTGGCTAAATCGATCATATACAACCTAAAACATGAAAGGGTCGAGCACAAtgtttaacaaataaatatgcACTTGttgacatacagtaccagtcaaacatatagacacatttttattagaggtgtgtccagaggtttgactggtattgtataaatattcatattttgaaATGTTATGTTTAAAATTACTTGGCAAAGAAATGTTAGCTTGATCTTTGcttaaattatacattaaattataatacaaatataaaagaaatagGGATTTCAAAATTATTCTAGATGTTTGTGTTAGCAtacattctgtttttatattttgttgcttaaataacttaaattagCTACACTGTTACAGTAGCctagcatttttttaataagagaCTTAGTTAACAAAGAAATGgtaacattttgttttgtttggttcCATATTCCAATTTGTAGGGATATTTCTGCAAAGCTAGTTCAGCTTAGCAACATTTTCTAAGGAACATTTGCATTTAAAGCATGAAAAGGCTAAGCTAATGGCTTTGGGCTAAAGCTCATGCTAAATACACATCACCTCCCACCCTTATAACAACCAATATAATAATCGAACAGTAGCTTGAACAAATAGGCTAACATGGCTAACTGTGAACACATGAGAGTCACATGTGAACATGGCTAACTGTGAACACATAAGAGGTCAATTAGCTCACTTAGCAACTGGAGCTAATATTTCTCAATCTCAGTAACTTGCTGAAAAGGTCTGCGTTTGAGGGTTATTAtgaataaatgtgaaaataagATGCTAAGTGCTGCTAGTTAGAACTCAGCTAGCAGTTCTGTAATGTTGCACAGCGTCTATCTGCCTTCATTCACGTTTAGCAACAGGTTTTTTAGTATATCGCTAATCTTGAGAGAAGCCTTAACTTGTGCTGCGCTCCATTTTCAAATTAAACAGCTATCGTTTGTTAGCATTACCTCAGGTTAGCTTTGCTACTGATACCATATCAGTTGCTAACAAACCATTAGGTAATATTTTGTGAATTCCAACAGcataataacatattataacacattataatacatgtCCACAGATAGAATTTGGACACTGCtgtgtgtattgttttgtatatttattaaggctacgttcatacagcaggtaaatgtggttcaaattctttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6085 lncRNA upstream 24690 18034511 ~ 18038744 (+) True G4531
TU6069 lncRNA upstream 51585 18010295 ~ 18011849 (+) False LOC103039709
TU6007 lncRNA upstream 54087 17929724 ~ 18009347 (+) True G4460
TU6135 lncRNA downstream 111847 18177608 ~ 18178083 (+) True G4563
TU6109 lncRNA downstream 146395 18212156 ~ 18280613 (+) False G4542
TU6110 lncRNA downstream 146395 18212156 ~ 18219394 (+) True G4542
TU6157 lncRNA downstream 192810 18258571 ~ 18261856 (+) True G4582
TU6158 lncRNA downstream 192810 18258571 ~ 18306252 (+) False G4582
XM_022669104.1 mRNA upstream 41045 18017759 ~ 18022389 (+) True LOC111192370
XM_022671146.1 mRNA upstream 51331 18010178 ~ 18012103 (+) True LOC103039709
XM_022669057.1 mRNA upstream 189618 17454350 ~ 17873816 (+) False lsamp
XM_022669050.1 mRNA upstream 189618 17454352 ~ 17873816 (+) True lsamp
XM_022671138.1 mRNA upstream 1371675 16689234 ~ 16691759 (+) True LOC111192859
XM_007233939.3 mRNA downstream 58933 18124694 ~ 18131953 (+) True LOC103030597
XM_022669160.1 mRNA downstream 72263 18138024 ~ 18166677 (+) False sidt2
XM_022669153.1 mRNA downstream 72264 18138025 ~ 18166677 (+) True sidt2
XM_022669167.1 mRNA downstream 72264 18138025 ~ 18166677 (+) False sidt2
XM_007233947.3 mRNA downstream 185162 18250923 ~ 18256343 (+) True LOC103032687
TU5717 other upstream 1440365 16619046 ~ 16623069 (+) False G4219
TU5719 other upstream 1440694 16619046 ~ 16622740 (+) True G4219
TU5723 other upstream 1517580 16542942 ~ 16545854 (+) True G4221
XR_002649582.1 other upstream 2901160 15072840 ~ 15162274 (+) False LOC103023550
trnae-uuc_1 other upstream 3017050 15046313 ~ 15046384 (+) True trnae-uuc_1
TU6119 other downstream 6203 18071964 ~ 18073663 (+) True G4550
trnaw-cca other downstream 335293 18401054 ~ 18401125 (+) True trnaw-cca
trnag-ucc other downstream 337944 18403705 ~ 18403776 (+) True trnag-ucc
TU6209 other downstream 693614 18759375 ~ 18759858 (+) True G4612
TU6210 other downstream 693614 18759375 ~ 18759858 (+) False G4612

Expression Profile