RNA id: TU6109


Basic Information

Item Value
RNA id TU6109
length 1878
lncRNA type read_through
GC content 0.36
exon number 2
gene id G4542
representative False

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 18212156 ~ 18280613 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aatgtttagatgtttactGCATTTTTATTGATTCACTCAATAATCCATCAACAAACACAGCAGGCACGCCGTCATACACTCAAGCAAATTCATCCAGAACACACCATCAACTAATCACAGACCGTTTAGACCAGTCCAGCCTGTGAAACTCTAACATACCTCCACTACctagaactccccctatcacctGAAGCTCTCAGCACTGAGAGGATGAACAGTAGCACAGTCCTGCTGCGAGAATGAAGAAGCTCCACTGCGTCTCCTTAAACTGCTGCTATAACAACACCTCTGgagctcaacacgcttggaggagaacactaactgctaACACATGCCTGTGCTTTGGCTAGCATTGCCTGTGCTGAGGGATGGGGGAGAGGGAGGGCCATCAATAAACAGTTACTGCATGTTCTCTGGGGCACCCAATCAAACTCACAAACTCAGTTTAGACAGTAATGCAACCCAGGATTTAGCAAATAACTGTATAATTAATTACATAGTATCCTAAACCTAAATTATGAAACACAATAGCAAACGATGCTAACAGTAAATGAAAGTGAATGGCCACAAATTAGCAAAATGCAAGGCTAAACTCAGTGGTGACTAGTTTCCACTTTTTGCTGGCTTAACTGTTAGCATGTTTAATTACACATAAACAGTCACGTAATCCACAAAATGTGATCCCATTGACCTTATtcccaataaaaaaagaacttcTTAACTACagactaatattaatattattaaaatgaatcactacattacaaataaaacattcagtTCGGGTGTACATACAGTATGATAAAGTTACATGTGCATGTTTTGCgtcttattaaaaatacattcgTTACATTGTTATACTCTCTACTTATTGAAGCGTTTAACACAGCTCAGGGTTTTGGTGTTCTTAGTGAAGTTTACATTAATAACAAcagaagtaataataaaaaagcgtggcattattactatttttattatttatagaacATGTTAAACGCTTGCTTATAAAGTGTCAGTGGCTCGTATATCAGATTTAGCTTaattttgaataataataaattattattgcaGGATTTAATATTTCTTACCCTATAATCCCATAATAACCCGAATATGATCATAAAATACCATCCGTTATTGATCAGGGCTGGGTTTCAATATTCACTGCTTTATCGATCACTAACTATCATACAGTTCTGCCTCAAACCAAAAGCATATAcaatggcttgcaaaagtactCATACCCTTTgaaccttttcacattttgtcacctttcaACCACCTGTCACCTTTCAAAGAAGCAGCTAAAAGGcctatggtcactctggaggagctgtagaaatccaaaaaaaagtgcaaagggcatgaatacttttgcaagtcacCAAATAGGTTCTTTGGAAACCACAATTAGGttctattaaaattaatatctagtatgaaatttacaaaaatttataaacatttacataCAGAATCAACTTCTATTAACATTGCTATCCAGAATGAAATTCTACTACAATAAATGATCAGAAAGAACATCTGATAAGAATAATATCCTTGTTTATTACAGGTAATAGATTCAAATGATTCAATAAAGAAGAGTTGACGGTACCTATAGTTAAGGAATCAATAAATCAGTGTCTGTATTGATCAGCCGTAAACGACACCCAGCCCTAATAATGACCACAGGGGAAAGTGCATTGCTTTAATCTGTCCACATGAGGGCGCTGTTTCTTGGCTCATAAGACTCACTTTCATAGTATACAAAACCTAATGAATGACAAACTGATTTATAGCACAGATGTAAAACTCACCATGttagacaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttatgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6135 lncRNA upstream 34073 18177608 ~ 18178083 (+) True G4563
TU6118 lncRNA upstream 146395 18063434 ~ 18065761 (+) True G4549
TU6085 lncRNA upstream 173412 18034511 ~ 18038744 (+) True G4531
TU6069 lncRNA upstream 200307 18010295 ~ 18011849 (+) False LOC103039709
TU6015 lncRNA upstream 226967 17958512 ~ 17985189 (+) False G4467
TU6166 lncRNA downstream 17903 18298516 ~ 18302148 (+) True G4589
TU6164 lncRNA downstream 24745 18305358 ~ 18306149 (+) True G4587
TU6168 lncRNA downstream 33941 18314554 ~ 18328007 (+) True G4591
TU6094 lncRNA downstream 131201 18411814 ~ 18420955 (+) False LOC103034503
TU6201 lncRNA downstream 436348 18716961 ~ 18717640 (+) True G4608
XM_022669160.1 mRNA upstream 45479 18138024 ~ 18166677 (+) False sidt2
XM_022669153.1 mRNA upstream 45479 18138025 ~ 18166677 (+) True sidt2
XM_022669167.1 mRNA upstream 45479 18138025 ~ 18166677 (+) False sidt2
XM_007233939.3 mRNA upstream 80203 18124694 ~ 18131953 (+) True LOC103030597
XM_022669104.1 mRNA upstream 189767 18017759 ~ 18022389 (+) True LOC111192370
XM_022669255.1 mRNA downstream 51726 18332339 ~ 18386319 (+) True LOC103036794
XM_007233951.3 mRNA downstream 108815 18389428 ~ 18400138 (+) True LOC103034176
XM_015601483.2 mRNA downstream 126506 18407119 ~ 18420970 (+) True LOC103034503
XM_007233954.3 mRNA downstream 206393 18487006 ~ 18499131 (+) True LOC103035466
XM_022669310.1 mRNA downstream 386266 18666879 ~ 18870819 (+) True fat3
TU6119 other upstream 138493 18071964 ~ 18073663 (+) True G4550
TU5717 other upstream 1589087 16619046 ~ 16623069 (+) False G4219
TU5719 other upstream 1589416 16619046 ~ 16622740 (+) True G4219
TU5723 other upstream 1666302 16542942 ~ 16545854 (+) True G4221
XR_002649582.1 other upstream 3049882 15072840 ~ 15162274 (+) False LOC103023550
trnaw-cca other downstream 120441 18401054 ~ 18401125 (+) True trnaw-cca
trnag-ucc other downstream 123092 18403705 ~ 18403776 (+) True trnag-ucc
TU6209 other downstream 478762 18759375 ~ 18759858 (+) True G4612
TU6210 other downstream 478762 18759375 ~ 18759858 (+) False G4612
TU6211 other downstream 478762 18759375 ~ 18759858 (+) False G4612

Expression Profile