RNA id: TU6166


Basic Information

Item Value
RNA id TU6166
length 3555
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G4589
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 18298516 ~ 18302148 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGAAGTGGGATGAAAATGATACAcagttttcaaaattttaatataataaaatataaaaagtgtgacgtgcaaaagtctAAATAAAATCAATCGGAAGTGacttaattagtaattagttaatagagtccagctgtgtgtaatttagtctcagtaaaAATACACTTCTATGTTCTATGAAGGCTTAGAGGTGTGTTAGGGAACACTTGTGAACAAACAGCTTCATGAAGACCAATGAACTCATCGaccagagataaagttgtggaatAGCTTAAACagggtttggttataaaaaaaaaacatgttctaaGCTTTGAGCATCacaaggagcactgttcaatccatcatccaaaatggaaaaaaagtattctacaactgcaaacctaccaaggcATGGCCGTCCACCCAAATAGCaagatcaagcaaggagagcactgatttaaaaaagcaGCCAAgaagcccatggtcactctggaggagctgcagaaatccacagcaaCTATAAgctgtgcactccacaaatctggccttcaTTTGCAATTTGTATCCACAAGCCATGTAGaaaaagttgcagaaAACTAACTCTAGATCACCTTAAACACACCATCTGCACTGTAAAACGTGGTGGTGGCAGTATCATtctggggatgcttttcttcagcagggacagagcaGCTGGTCAGAGTTTGTGGgaagatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatcaagtAATCTCCATGTATCTtactctgtctctgtttattgCTAAAGGTGCTTATTAAGCTCATCTTTAGGGAGATCTCAAGCCATCCTAAAACGAATTGTGTATCTGTTAAAGTGTGATTTATgctgttttagttttagctgAATGTTGTAGTTGATTCTGtaccttcagaaaaaaaaacaaaatgtattaatattggTAATATTACcaatttattacttttattagaaGTCATTTATTGGttgaaaacatgaaaactaTCGAGGTCTATAAGCAGGAGGACAAAAGCAAACACAAAAGCAGGAAAATAAGTTCATGAGGATtgtgaaaggaaaaaaacattgatttaaaaatgattaatttatggCTTTTACACGCAACCATAAACAGTGTGGCGGAATAGTGCTGCTACATCTGCAGGCCAAACCCCTGAGTttgaaaagagagaaacaaacgaaaaaagaaaataaaaaagagaataagTAAAAAGTTGGCAGTTCTCTAAAAGTTAAGAGCCGAGTAAAGAGTTGAGTAAGAGTCGAGTAAGAGActgaagagtgagagagaatgactTTGTTGGTTTCCGGTGTCCATGTGACTTATATTGCGTATATCAGACGTGATCACCATGTTCAAGTACAGTTCAATATTTACAAAAAGAAATAACGAAGacagaaacaagaaaaataagaataagaaaagtAAGATCATAACATAAGCCATAGATTTCATTTCAGTACTGATACGTCAACGAAAATATAATAGTGATGGAGATGAGGATGACGCTGTTATTCGCTCGAAACAAATTAACACAATTTTATCTCAAAAAAACTCACAATCGCAAAAGAAACGACAATAATTACAGCctaaatgaaagaaagagaaagtaaagacaaagataaaacaaCACAGGAATACACAGTGGTGCCGTTCTTTCTTCTCAAAAAATTtcaaaaaagattttaagttttgAAATTAGCTCAAAATCATCTAGAATCATTCGTTTTTTTGTTACGCAAGTCACGTAACCCAAGGCAACCGAATCTCCTTGTCTCTTTTGCCAAATATCAGTGTTTTAAACCATCATCTGTTCCCTTTCCACACATTTATTGAACGAACATTGTTCGGCATCAGTGTTTGGTGGTGTTAAGCCattaaaaaccaaaaataaaaagcatgcACTGAATGGGTAGTCTTTGACATGAGCAtgctatccatccatctcttcCCCTTTCATTGGTGCCATTAGAAATGTAGTTGTAATTGGACCATTACAATTCAaagtccatttaaaaaaatacaagcagcttcagaaataaaccaaatatatGGAGAACCCAGTGAGACAATCTCGAAAATGAGCAACTGTCCACTTTTTGACCCAGTTATTAATCTAGATCTTCTCAAAACATCAGATCAGGATTCAGGAGAACCTCCAGAAGATGTCCATTAGGAGGCTCACCACCACTTTGCCTTAGACTGTCCATATTTTATGCTCAAggcataatttttattttatttaagccagGATTTCAGGCCTGTAGACTTGAGCTTGAGTTTTCACAGTTAATTAAGcctcatatacagtataaatacagcgaaacaacataaaacaacaGCAGAATCATAAAACAGAGTTCATGAAACATTGatagcaacagtttttttttcagactacgtttacatttacataacaATCAATAACTTAATCTAACTCAAACTTTTCTTCAGAATGAtctcatgatgatgatgatgtttttaCACCTATTGTAAATTTGCACATCCACCACCTTTGCGTACATCATTAGAGTGGTTCTAATTTTAGATCTTTTCCTAAATGGAGCTTCTGTTTGTTCAAAGTCTGATAGGCAAATACAGGAGATGGTCATTAGCGTAAAGAATGTAAATGAAATCAAAGACACAGGTACGACCAAGACAGCACGAAGTTCAGTTCGGTGCGGTTTGTCCGAAATTCCCTTCTCCttcaagccccgccccctcaccACCAACCTAAGCCCTGAACTACAACACCTGGAACTTCCAGGAATTCTGGTCTTTGTAGTCCAAGCAGTCGGCTGCGTTGAAGTTGAGCTTCCAGGCCGCCTGGTCCTTGTAGTCTAAACAGTCAACAGTGCCGAAGCCGAGGGAGGTGGTGTAGCCCTGGGAGGACAGGGAAGCCGGCGACTGGCTAAGAGCTCCACCCATGGAAGAGGCGGTGATGGGGCTGAGTGCGCCCCCGGTGGCGGAGAGCTGCGGGTGCATGGGCGAAAGGTACGAACCGCAGTCCAAACCTGTGAAGTAGCTGGAGGAGCTGGCGTAGCCCTGGGTGTAGGCTGGGGCTTGGGTGTAGGTCATAGGGTAGGCGGTGGAGCGCTGCATGCAGGGGGTGCTGGAGGCCGACAGCGGGTCGGGCAGGGGCGAGATAGAGGCCGGGCTCCAGATGGACACAGTGGCACTGGCGCCGCTGGAGCTGGGGGTGATGGCTGTGCCCGGGGCAGGTGGAGGTGGGCTGTAGGGGCCGTTGGTGCTGGCACTGGGCTCAGACGGGGTCTCTCGGACCGGAGATGACTTCTTCTTGGGTGGACGAGGCTTGGATTGCCCagtgctctgctgctgctgctggcggCACTTGGCGCGGCGGTTTTTAAACCACACCTGTTGTGGGTGGAGGATAAAGTTTGATTAACACTTTAATATTGCTAAATTAACACAATATTTACATCCACACTTTTAAGCTCATCACTATAAAGACTACATTGATTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6109 lncRNA upstream 17903 18212156 ~ 18280613 (+) False G4542
TU6157 lncRNA upstream 36660 18258571 ~ 18261856 (+) True G4582
TU6110 lncRNA upstream 79122 18212156 ~ 18219394 (+) True G4542
TU6135 lncRNA upstream 120433 18177608 ~ 18178083 (+) True G4563
TU6118 lncRNA upstream 232755 18063434 ~ 18065761 (+) True G4549
TU6164 lncRNA downstream 3210 18305358 ~ 18306149 (+) True G4587
TU6168 lncRNA downstream 12406 18314554 ~ 18328007 (+) True G4591
TU6094 lncRNA downstream 109666 18411814 ~ 18420955 (+) False LOC103034503
TU6201 lncRNA downstream 414813 18716961 ~ 18717640 (+) True G4608
TU6204 lncRNA downstream 454612 18756760 ~ 18758132 (+) True G4611
XM_015601482.2 mRNA upstream 17487 18274825 ~ 18281029 (+) True LOC103033229
XM_007233947.3 mRNA upstream 42173 18250923 ~ 18256343 (+) True LOC103032687
XM_022669160.1 mRNA upstream 131839 18138024 ~ 18166677 (+) False sidt2
XM_022669153.1 mRNA upstream 131839 18138025 ~ 18166677 (+) True sidt2
XM_022669167.1 mRNA upstream 131839 18138025 ~ 18166677 (+) False sidt2
XM_022669255.1 mRNA downstream 30191 18332339 ~ 18386319 (+) True LOC103036794
XM_007233951.3 mRNA downstream 87280 18389428 ~ 18400138 (+) True LOC103034176
XM_015601483.2 mRNA downstream 104971 18407119 ~ 18420970 (+) True LOC103034503
XM_007233954.3 mRNA downstream 184858 18487006 ~ 18499131 (+) True LOC103035466
XM_022669310.1 mRNA downstream 364731 18666879 ~ 18870819 (+) True fat3
TU6119 other upstream 224853 18071964 ~ 18073663 (+) True G4550
TU5717 other upstream 1675447 16619046 ~ 16623069 (+) False G4219
TU5719 other upstream 1675776 16619046 ~ 16622740 (+) True G4219
TU5723 other upstream 1752662 16542942 ~ 16545854 (+) True G4221
XR_002649582.1 other upstream 3136242 15072840 ~ 15162274 (+) False LOC103023550
trnaw-cca other downstream 98906 18401054 ~ 18401125 (+) True trnaw-cca
trnag-ucc other downstream 101557 18403705 ~ 18403776 (+) True trnag-ucc
TU6209 other downstream 457227 18759375 ~ 18759858 (+) True G4612
TU6210 other downstream 457227 18759375 ~ 18759858 (+) False G4612
TU6211 other downstream 457227 18759375 ~ 18759858 (+) False G4612

Expression Profile