RNA id: TU6135


Basic Information

Item Value
RNA id TU6135
length 452
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G4563
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 18177608 ~ 18178083 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCAGGCAGGAATCTGCTCCAGTGGGAGTTGAAGAGAAGATCCGAAGATCCACGTGAAGGTGTCACTCCATTTACTCCACTGCTGTGTGCAAACCCGTTCTGATTGGTGATAGAGGTGGAGGAGGCGGGGCTTGGGGGCCATGCCCACATGGAGGTGGGGGGAAGTGAGGAGGATCGAtgagagagaggctgagagaGAGGCTGGAGTGGTGCGTGTGCAGCCAGAGGGGGCGCTGTTCTCTGGGTAAGGGATCCCAATGCCCCTAAAACCGTATTCAGCTGACCGGAGATGTGCTGCAGCGAATCGGCCAGCTGCTGCACCTTCACTGGAACTGTAGGagctggaggagagagagaggtaaagagaaattaaaaatgaaaataacaagaaaaaaaagggattaCAATGATTCTATGTTTGGCACGATGTTGGCATCAGACTGGCTATGGTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6118 lncRNA upstream 111847 18063434 ~ 18065761 (+) True G4549
TU6085 lncRNA upstream 138864 18034511 ~ 18038744 (+) True G4531
TU6069 lncRNA upstream 165759 18010295 ~ 18011849 (+) False LOC103039709
TU6007 lncRNA upstream 168261 17929724 ~ 18009347 (+) True G4460
TU6109 lncRNA downstream 34073 18212156 ~ 18280613 (+) False G4542
TU6110 lncRNA downstream 34073 18212156 ~ 18219394 (+) True G4542
TU6157 lncRNA downstream 80488 18258571 ~ 18261856 (+) True G4582
TU6158 lncRNA downstream 80488 18258571 ~ 18306252 (+) False G4582
TU6166 lncRNA downstream 120433 18298516 ~ 18302148 (+) True G4589
XM_022669160.1 mRNA upstream 10931 18138024 ~ 18166677 (+) False sidt2
XM_022669153.1 mRNA upstream 10931 18138025 ~ 18166677 (+) True sidt2
XM_022669167.1 mRNA upstream 10931 18138025 ~ 18166677 (+) False sidt2
XM_007233939.3 mRNA upstream 45655 18124694 ~ 18131953 (+) True LOC103030597
XM_022669104.1 mRNA upstream 155219 18017759 ~ 18022389 (+) True LOC111192370
XM_007233947.3 mRNA downstream 72840 18250923 ~ 18256343 (+) True LOC103032687
XM_015601482.2 mRNA downstream 96742 18274825 ~ 18281029 (+) True LOC103033229
XM_022669255.1 mRNA downstream 154256 18332339 ~ 18386319 (+) True LOC103036794
XM_007233951.3 mRNA downstream 211345 18389428 ~ 18400138 (+) True LOC103034176
XM_015601483.2 mRNA downstream 229036 18407119 ~ 18420970 (+) True LOC103034503
TU6119 other upstream 103945 18071964 ~ 18073663 (+) True G4550
TU5717 other upstream 1554539 16619046 ~ 16623069 (+) False G4219
TU5719 other upstream 1554868 16619046 ~ 16622740 (+) True G4219
TU5723 other upstream 1631754 16542942 ~ 16545854 (+) True G4221
XR_002649582.1 other upstream 3015334 15072840 ~ 15162274 (+) False LOC103023550
trnaw-cca other downstream 222971 18401054 ~ 18401125 (+) True trnaw-cca
trnag-ucc other downstream 225622 18403705 ~ 18403776 (+) True trnag-ucc
TU6209 other downstream 581292 18759375 ~ 18759858 (+) True G4612
TU6210 other downstream 581292 18759375 ~ 18759858 (+) False G4612
TU6211 other downstream 581292 18759375 ~ 18759858 (+) False G4612

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU262104 True 373 lncRNA 0.55 2 NW_025047826.1 290150 ~ 290566 (+)