RNA id: TU6110


Basic Information

Item Value
RNA id TU6110
length 3136
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id G4542
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 18212156 ~ 18280613 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aatgtttagatgtttactGCATTTTTATTGATTCACTCAATAATCCATCAACAAACACAGCAGGCACGCCGTCATACACTCAAGCAAATTCATCCAGAACACACCATCAACTAATCACAGACCGTTTAGACCAGTCCAGCCTGTGAAACTCTAACATACCTCCACTACctagaactccccctatcacctGAAGCTCTCAGCACTGAGAGGATGAACAGTAGCACAGTCCTGCTGCGAGAATGAAGAAGCTCCACTGCGTCTCCTTAAACTGCTGCTATAACAACACCTCTGgagctcaacacgcttggaggagaacactaactgctaACACATGCCTGTGCTTTGGCTAGCATTGCCTGTGCTGAGGGATGGGGGAGAGGGAGGGCCATCAATAAACAGTTACTGCATGTTCTCTGGGGCACCCAATCAAACTCACAAACTCAGTTTAGACAGTAATGCAACCCAGGATTTAGCAAATAACTGTATAATTAATTACATAGTATCCTAAACCTAAATTATGAAACACAATAGCAAACGATGCTAACAGTAAATGAAAGTGAATGGCCACAAATTAGCAAAATGCAAGGCTAAACTCAGTGGTGACTAGTTTCCACTTTTTGCTGGCTTAACTGTTAGCATGTTTAATTACACATAAACAGTCACGTAATCCACAAAATGTGATCCCATTGACCTTATtcccaataaaaaaagaacttcTTAACTACagactaatattaatattattaaaatgaatcactacattacaaataaaacattcagtTCGGGTGTACATACAGTATGATAAAGTTACATGTGCATGTTTTGCgtcttattaaaaatacattcgTTACATTGTTATACTCTCTACTTATTGAAGCGTTTAACACAGCTCAGGGTTTTGGTGTTCTTAGTGAAGTTTACATTAATAACAAcagaagtaataataaaaaagcgtggcattattactatttttattatttatagaacATGTTAAACGCTTGCTTATAAAGTGTCAGTGGCTCGTATATCAGATTTAGCTTaattttgaataataataaattattattgcaGGATTTAATATTTCTTACCCTATAATCCCATAATAACCCGAATATGATCATAAAATACCATCCGTTATTGATCAGGGCTGGGTTTCAATATTCACTGCTTTATCGATCACTAACTATCATACAGTTCTGCCTCAAACCAAAAGCATATAcaatggcttgcaaaagtactCATACCCTTTgaaccttttcacattttgtcacctttcaACCACCTGTCACCTTTCAAAGAAGCAGCTAAAAGGcctatggtcactctggaggagctgtagaaatccaaaaaaaagtgcaaagggcatgaatacttttgcaagtcacCAAATAGGTTCTTTGGAAACCACAATTAGGttctattaaaattaatatctagtatgaaatttacaaaaatttataaacatttacataCAGAATCAACTTCTATTAACATTGCTATCCAGAATGAAATTCTACTACAATAAATGATCAGAAAGAACATCTGATAAGAATAATATCCTTGTTTATTACAGGTAATAGATTCAAATGATTCAATAAAGAAGAGTTGACGGTACCTATAGTTAAGGAATCAATAAATCAGTGTCTGTATTGATCAGCCGTAAACGACACCCAGCCCTAATAATGACCACAGGGGAAAGTGCATTGCTTTAATCTGTCCACATGAGGGCGCTGTTTCTTGGCTCATAAGACTCACTTTCATAGTATACAAAACCTAATGAATGACAAACTGATTTATAGCACAGATGTAAAACTCACCATGttagacaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaaatggcttAGGAGCTATCAGCCCCATCCTCCGTGGCTGGTTTAGTACTGAAAGAACAGCAGTGGCAGTTTCTGAGGGAATAcactcaaataaacacacacgcacacttgtTAAGTAACTGTTACTTGGTACAGTAATCTGGTACAGTTTAGATGCACTTAATCATTTCATAAGAaatcatactggattaaactgAAACTGGAAATAAAGATAAATGCAtgatgtatcatttttgttgtGAAACATTTTTATAGGGAATCAACCTGAATTTAACTATAATTGAATGGTTTTAATAAACTGAATCTTTTCCTAAagaattgagctaaactgaaaagtaagtaattaatttaatttcttaattatttttaacagttaaaatTAAAGAACTCATGAGGCCCTATCTTCCATGCTGCTCAAGgcatgttgtgatgctcattgctatcttataccctgcAAACAGTCTTTAAGAAGTATTTTCACTTCCtccacctgcattgtttaaatggCAACAGTGCtcgtgaatatatctacactgataagCGTGGTGGtctcttggcaacagaaaacacaggtgcaccactgactgaatacaacctagacagatgttagaacatgccttttgcacattttgagtcGTGCAAGGTGTACATATTGTTGTTAGAATACCAACGATACACTGATGCccaaaattaagtaaaatctaTTATGCACCCTATTATATCCTATTGTTCTATTGTCCTATTGTTATCCTATGTTCTGTTCAGGAACTCATTatgtactgaatcattttacaGGGAATTAAATTATGATTCAAATGATTCGTTTCTTAggaactgaatcaaatcaaaCGGTTAAATCTTTTGATACCATGCTGCAAtgaataattctttaaaaaactgaATTGAATCACAACATTTCTGaggaataaattaataatttacaatCAAGTGAAATCCTAACTAACTTATTAGTTATAAGTTTATACACACATTCAGACCAGTTACCCTGTAAAAGCCGTGTGATGATTCAGTATATCACACACTGCACCAAAATCTCatgatacacaaacacacacacacacacacacacacacacacacacTCCCcctgaagacacacacacaatcaatatAGGACCATTGTAAACACTGCCATTTACACTGTGTGAAgatttcatgataaatggagCATTAGAAATGCAATATAACTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6135 lncRNA upstream 34073 18177608 ~ 18178083 (+) True G4563
TU6118 lncRNA upstream 146395 18063434 ~ 18065761 (+) True G4549
TU6085 lncRNA upstream 173412 18034511 ~ 18038744 (+) True G4531
TU6069 lncRNA upstream 200307 18010295 ~ 18011849 (+) False LOC103039709
TU6015 lncRNA upstream 226967 17958512 ~ 17985189 (+) False G4467
TU6157 lncRNA downstream 39177 18258571 ~ 18261856 (+) True G4582
TU6158 lncRNA downstream 39177 18258571 ~ 18306252 (+) False G4582
TU6166 lncRNA downstream 79122 18298516 ~ 18302148 (+) True G4589
TU6164 lncRNA downstream 85964 18305358 ~ 18306149 (+) True G4587
TU6168 lncRNA downstream 95160 18314554 ~ 18328007 (+) True G4591
XM_022669160.1 mRNA upstream 45479 18138024 ~ 18166677 (+) False sidt2
XM_022669153.1 mRNA upstream 45479 18138025 ~ 18166677 (+) True sidt2
XM_022669167.1 mRNA upstream 45479 18138025 ~ 18166677 (+) False sidt2
XM_007233939.3 mRNA upstream 80203 18124694 ~ 18131953 (+) True LOC103030597
XM_022669104.1 mRNA upstream 189767 18017759 ~ 18022389 (+) True LOC111192370
XM_007233947.3 mRNA downstream 31529 18250923 ~ 18256343 (+) True LOC103032687
XM_015601482.2 mRNA downstream 55431 18274825 ~ 18281029 (+) True LOC103033229
XM_022669255.1 mRNA downstream 112945 18332339 ~ 18386319 (+) True LOC103036794
XM_007233951.3 mRNA downstream 170034 18389428 ~ 18400138 (+) True LOC103034176
XM_015601483.2 mRNA downstream 187725 18407119 ~ 18420970 (+) True LOC103034503
TU6119 other upstream 138493 18071964 ~ 18073663 (+) True G4550
TU5717 other upstream 1589087 16619046 ~ 16623069 (+) False G4219
TU5719 other upstream 1589416 16619046 ~ 16622740 (+) True G4219
TU5723 other upstream 1666302 16542942 ~ 16545854 (+) True G4221
XR_002649582.1 other upstream 3049882 15072840 ~ 15162274 (+) False LOC103023550
trnaw-cca other downstream 181660 18401054 ~ 18401125 (+) True trnaw-cca
trnag-ucc other downstream 184311 18403705 ~ 18403776 (+) True trnag-ucc
TU6209 other downstream 539981 18759375 ~ 18759858 (+) True G4612
TU6210 other downstream 539981 18759375 ~ 18759858 (+) False G4612
TU6211 other downstream 539981 18759375 ~ 18759858 (+) False G4612

Expression Profile