RNA id: XM_007236837.3


Basic Information

Item Value
RNA id XM_007236837.3
length 2306
RNA type mRNA
GC content 0.51
exon number 3
gene id LOC103043061
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 14815554 ~ 14822099 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gagagagagagagagagtgtgtgtgtgtgtgtgtgtgagtgtgagtgcgtGCACGCGCCTGACTGCGCGTCCCCGCGCGATTCTCCACACTGGGTTGGCTGTCTGCTCGGAGGCTCGAGGATGCGAGCGGGGATTTAGTTTCAGTGTCTTTTCCAGCGCGCGCCAGATTATTATTACCGTTCAGCAGCAGAGGCAGCACGCGGGGACGGATTTAGCCCTACGAAAGAAGGTTTGAGGATACTCTTCTCCACACGGACTATGATGCAGAATTCATTATTTCCTGTGGGAATACTATCAAGCACTGCTAGTCATCAATGAACTCGGTTCCATAAAGAATACACAAAAACAAGACAGTGTTTAAGGGAGGGAGATCAAAGAGCACTTTTTTGATATGGCGGCAACAGAGGCTAGCACGGAGCCTGTCCAAGCGGACACCGTGGAGACCAAAGCTGAGGAGGAGCCTGCAAATGTGGAGTCAGCCCCTGCTCCAGCTGAGGAAACACCGCCCAACACTGAGACACCTCAGAGCACAGAGCAAGCAGCAGACAACAAAGTTAAGCCAGCCTCAGAGAAAATCTGGGACTCATTTCTGAACAAAAGTGGGCTTGGAAAAGTAATGGgagggaagaagaaaaaagaccaTGGTACAGTAGCTGAGGATGCTGCTGTCGAAGAGCCAGACAAGGCCACAGCTGCGAACGCAAGTGAGCAAGGGGACGCAGCCGAGCCAAAAGAACAAGCAACTAGTCAGTCGGCAGAGACGAGTGAAGTTGCAACTGATAGCCAGGCTATTGAAAAAGTACCAGAAAATGAGGAGGTTGTCCAGGAGCAGAAGGCGGCTGGCGCAAAGCCAAAGCAAGGAGAAAAGTCCAGTGTACGAGATTTCATTCGCAAGCCTGTTGCCAGGATTTTCTCACACAGAAgcacagagaaaaaagaaggtACAGGGGAGGTTCTAAAACATGGCAAGGTTCGATCAAAGTCACTTGACAGATTAGAGGATGCTGATGCCAGCACAGTTGTGGTGGACCAAGTTGAAGATCCACAGGCTCCAGAAGAGCCAGACAAGTCAACCTCCCAAAGTACAAAACACATGAAACGCTGGCACTCCTTTAAGAAGCTTATGGCACAGAAGGGCCACAAGAAAAGTGCTGATGATAAGGATGTGGAAGGAGCTGAGGGTGTCAGCGCAGAGGCACCAGGGGACACTGGGACACTGGACTCAACtacaaagtcagagcacactgGGCAAAAAAGATGGAAACTAAAGAGGTCATGGACATTTCAGGGTCTGAAGAGAGATACGTCTATGGTTGGAATTCACAAACCAAAAGACAAAGACTCTTCAGATAATCTTAAAGATGAGAATGCTCCAGAGGGAGAACAGGGGACCACACGGGTGTCTGAAGGCGAGGGAGAAAGTGAGGAGAAGGCCAATGCAGAGGGTGAAGAAGAGAAAGGGGCAACTGCTGCCACATCGCGGGCAAAGTTTGTAGATCAGCACGCAAATGAGATCTGGACCTCGTTTAAAAAGCGAGTCATTCCCAAGTCAAAGAAAACATCGGACACCAGCGGAGGAGAGGAAGAACCAGCAGGTGAACAAGAACAGACTGACGAACAACAGGCGGGTAAAGACTCGGGCAAGACTGCCAAGTCTAAAAGGACACATTTCAACCGTGCTGTCTCACTAAAGAACTTCATACTGCGCAAGGGGAAGAGTGCTAGCATGGACATGGGGGATGGCTCAGCAGCACAGAAAGAGGGTGAAGGGGAAGCTAAAGAAACGGACGGCCCTGCAGACACAGCTGGGTCAGCTGACCTCCCACAGGGTGGATCAGAGGACCAGGTTGCCACACAGAGTGAGAGCAACAACAGTGCTCAGGTGGCAGACGAGCACAAGAGCTCTGATGGAGAGGAGAAGTCCCTCCCAAGCATACCATCTGGTGAGCAGGCAGACAAGCCTCACTTAGCTTCAGAGGGAGAAGGCAAGACAGAGCCAGCAGTGGAACCCAAGACCAATGGAGAGAACGGATGTTCAGATGCTGCATCAGAGGACACCACAGCACACAATCACGAGCTTCCTACTACAAACGACGAAGGAAAGGGAGAAGTGACAACCCAGGAGAACATCAATTCTAGTGAAAACAAATCTTGTCCAAAGGACGGGAAGATCCTGAATCAAGACGGGAAGTGCGGCACTGGAAATGCAGTTGCCCAAAGCGaaaaaaaggcgggaaacgtGTGACGCCACACAAAGAGGATTAGATCTGCATGGGATTCGTTCAGCGAGGAGCTTtgtccccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4876 lncRNA upstream 221495 14592933 ~ 14594059 (+) True G3648
TU4748 lncRNA upstream 302765 14511140 ~ 14512789 (+) True G3575
TU4733 lncRNA upstream 310539 14444558 ~ 14505015 (+) False LOC103039352
TU4712 lncRNA upstream 379973 14414289 ~ 14435581 (+) False G3561
TU4710 lncRNA upstream 382379 14414289 ~ 14433175 (+) True G3561
TU4972 lncRNA downstream 19769 14841868 ~ 14845624 (+) False LOC107197063
TU4973 lncRNA downstream 19769 14841868 ~ 14845624 (+) False LOC107197063
TU5077 lncRNA downstream 212667 15034766 ~ 15035187 (+) True G3787
TU5078 lncRNA downstream 213843 15035942 ~ 15036582 (+) True G3788
TU5085 lncRNA downstream 247331 15069430 ~ 15069802 (+) True G3794
XM_007236836.3 mRNA upstream 12593 14766814 ~ 14802961 (+) True LOC103042749
XM_007236834.3 mRNA upstream 61918 14731107 ~ 14753636 (+) True clip3
XM_007236835.3 mRNA upstream 61918 14731107 ~ 14753636 (+) False clip3
XM_007236832.3 mRNA upstream 109835 14671512 ~ 14705719 (+) True LOC103041611
XM_007236823.3 mRNA upstream 312205 14446750 ~ 14503349 (+) True LOC103039352
XM_022665613.1 mRNA downstream 18194 14840293 ~ 14845626 (+) True LOC107197063
XM_022665665.1 mRNA downstream 18196 14840295 ~ 14845626 (+) False LOC107197063
XM_007236838.3 mRNA downstream 25084 14847183 ~ 14859409 (+) True LOC103043366
XM_022665774.1 mRNA downstream 25084 14847183 ~ 14859409 (+) False LOC103043366
XM_007236844.3 mRNA downstream 37798 14859897 ~ 14868595 (+) True LOC103044784
TU4335 other upstream 1831285 12982625 ~ 12984269 (+) True G3313
TU4041 other upstream 2888304 11924450 ~ 11927250 (+) True G3096
TU3793 other upstream 3526708 11288131 ~ 11288846 (+) True G2910
TU3788 other upstream 3536395 11273998 ~ 11279159 (+) False LOC103029949
XR_001518524.2 other upstream 5073089 9634094 ~ 9742465 (+) False LOC103039705
TU4998 other downstream 139074 14961173 ~ 14963583 (+) True G3736
TU5080 other downstream 216456 15038555 ~ 15038914 (+) True G3790
trnae-uuc_1 other downstream 224214 15046313 ~ 15046384 (+) True trnae-uuc_1
XR_002649582.1 other downstream 250741 15072840 ~ 15162274 (+) False LOC103023550
TU5723 other downstream 1720843 16542942 ~ 16545854 (+) True G4221

Expression Profile