RNA id: TU254120


Basic Information

Item Value
RNA id TU254120
length 6163
lncRNA type inter_gene
GC content 0.38
exon number 4
gene id G187399
representative False

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 4941025 ~ 4949650 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTATAAGTCATTGTGATCttttatttagagtttttttaCAAGGTGTCACAAAATACTTCCCTGAATTCaagacaaaaatgtattttttcgtagatttttttcttttcattacaATTTTTTGTAAAGTACACAGTACTGTTATATACATTTCTTATAGctaaaaactgtacaaaacccCTGTGCAAGTTCAGCCACAAAACTCAAAACTGTAGAAAACAGCAGTTTGCACTTCGTCGGCAATGATAGTGTGCGCTCTTCGTAACACTGGCCCCGCCTCCAACGCTGCTCACGCCTCCCACTTTAGAACCAACTGATTGAAATGCCTCAATGTGACCAACAAACCACGGAAATACTAAAACACTGACGAGTAGGGGAACATCCACAGAGGACAGACTCTCAACAAGAAGACGGCAAAAACCCATGCCATTATTTTGGCATCGTATTTAAATAagctaatgaaaaaaaagaaagctggACTGAGTTAAAGGGTAATgggtaaaataaaacttttttttttttttagatagacCCTTGTCTCGCTGGTTTTTAAGACTGGAGAGATGTACTTGCTGTTAACCATGCAGTCACATACGCATGATTTCTAGCTCGTATTTACTGGAGTTGTTTGATGCGTTggctgtgtgtttaaaaaaaaaaaaaagtacacatATAAACACTAGGGGCAGCGCAGCATTCAGCAGCAATAAAATAATGGACTGTTTTGTTAAACAGCTACCGGCATATAATCTCTACAGAAGAGAATAATACCCACGTAAAATGTATTCAATGTATTCAAGGGGGTTGTCAGACACTAGAGTGGGTCCAAAACAAATAGATTCTTCTGAATAATTTGAgcaaaatcatatttaataaatatttgatcattttaatacTACAAATATGGAAACTAATCATCATTTCAAAGCTTTTTATCTTTGTGCTCTGGCTTTAACTCCAGCATCAGATcagcaaccaatcagctcacagcagAAGTAATGCTAGCATGtctattgtttaaaataaatgtttttaaaacaacattatttATTCAACTTTCTTAAATTAAAGGTATATTCTGGACAACTAATTAGTTACTATTTTTACCAGAGCCCGGTTATGGAGAGCCTGCCCCCTATTTTCTATTTCCCTCATTATAACAGAAAATAACTGCAAAACACTACAGGAAGCCTGCAAGTAAGTCTCTAATTAATGAGGGTGAATAAAGCtaaacagatataaattcaaataataaatattaactaaCTACTTGTTCAGGACATTCCTTTCAATTTAGACAGTACAATAAAGCATACTGCTAAAAAgcaaataatataatagtatatttCAATTTCTCTACAACAAACCAAAAGCAGTAAAgacactagcattactgctactgtgagctgactgGTGCTCAGCTGATCCTGGAGGTcagtataaaaataatcaaacatttaaaaactatgATTTTTACGTAGTcgctaaggtgacatcatgttaaaaaaaataagacgtGGCCATAACCTATTAAGGTGtaggaacgagatcctaatgcgtGTCCACAAGGTCCTTTTGTTTCACAGATGACAAAGCAAGCAGCTCTCAGGGTTTGGGCACAATGTGATGCCTAAGGAAGGTAAACAGGTCTGTATACTGTCTGCATCtgagccaatcagtttttagtatGAGAATTAAGAGTcttttacttatatattaatCATACCATGTCTCATTGCAAGAGActccaaaatatcaccataattcattcagagattaaaaaaaaaaaaaaaaacagttcactcTCCATTTTCTTACTAAAGATTATCCTTGCATTAAAGGAGCTATGATGCAATATTCAGTTTCTTCATCCGCATTCATTTATagaaaagcaagctttattattctccggctatgacttaattatcttgttcccatgccttaattatctcattcacaAATTCGTTATCTCGTTCCACGCAGTAGAATCTCAAATCTCATGGCCACACATAAtttgtcaccttaggggctccgtaGATTTTTCTCAATTGATCCATATTAgtcattttggactcacttgGCATCGCCCTCTGGTGGTCTAACAAACCCTGAGCACATTCTCAAGTAAGTATTTGCCTCTCTGGAGCTTTTCTGCTGCTACTCACTTCCCTTGATGTTGAGGCTAGTGGAACACATGTAACACACTCACGAGGTTGTGAACAGTTCTGTACACATGACCACCTGGTCtaacagcaagtatatctctGGCCTAAGGACTGAAAACGGCAAAAGCAGATTTAAATTGCTAATAATGAGTGAAAGGTGTACGAAAGGAGAAAAGAGTAGAGCTgtaatgctgcttcagctcaATAACTCAAcaaaactgctaaaaaaaaaaaaaacgtgttctCGAGATTCTAAATCAATTTCTACTAAACTGGGAAATATGCATTCtacaaattttacaaaaaatacacaaaaaattggaaaataaaTTTGTTAACCATCGTATTACAGTGCAGTTCTTCCCAACACTGCAAAAGCCCAAACATAaggtgaaaaaacaaacaagactgAAACGAGTAGAGGAATGCTCTAGACTTATATCATTGTGAGATATAGGAATGGGAAGATATTTGCATTTTAGCAAGCTGGATAGAAATAAACTGGAGggaaacataaacaaaacatatatttatacatacatcCGTCTTTCTACCACTGAACAGTGCTGAATCACAGTGTGATTCATCACCTAGACCTTCACACACTGTTCTATTTCATGGACTGAGCCTGGCATTTTCCCTGATACTGAGTAAATGTACTACATAAGGGCTTATGAGTATTAGTGTAAATCTCAACAGCTTCAGCCATTGTTAAGCTTTCTTCCTTCTCAAGGTTCTCTACTGTTCTCAGTTCTGTTACCATCATCTTTACAGCTTTAGAATATAGAACAAACTGACTggctgagagagtgagacatGGTGACCACTTgccctgtgttcacactggcagACAGCATAACGACAAGCTGTTAGTTATTTCCTACAGGGGAACACGGTTTGTAGCCAGGATTAGTTGGCAAGCAACTATATTCAGATAAATAACGTAGCAGTAAAGCGACATTATAATCTGATTGGTTTGAACAATTGGTTCGGCCAATCACAGACATCGGGGTCCGAGATTCCCAGGTTCTGCTTTCTGTACTTTTGGTTTCTATAGCATTTCGTTAATAGACGCTAATTCTTCTTTTCCTGATTTATTACGATGCATATTTGCACATtaattaaaagagaaatgaaATGCGGATGAAAGGACGACTCAATAAGATTGCTagattagccagcatgctaactggCCACGCCAATACATGCAACAACGCAAGCAACAACTAAACACCCACAAGAGACAAACTTGGGGCAGCGTGAGCGACTTGTCATCATCTGCCAGTATGAACACAGGATCATAGTAACAATGCCAGACTGAGATTGTGGggaaaaccaaaaacaaatcaAGGTGGAACAGGGAAATAAGCTAGCATGTACACTGCAGCAACTAATAAGGCCCCAACAGGGTGTGCCCCAACTGTGTACTAATCACTAAGTATGAAGTTTGTAATGTAGAAAGAATGATCACATTTGAATctgctttttctttaaataaataattaatagatactttttaaacattttaagtgtttgtttCCTGATATGTTCTTCTAATGTTTGTGGTATTGTTGTTTTCCATTTGTTTTGTATGTGAATAGAGAACTGTGTTGAACAGAGGGGTTTAAAggatacagttctggaaaaaattaagagaccacttcagtttctgaatcagtttctctgattttgctatttataggttatatataagttttaagagttcagaaatcaattaatcaagttttttaatcacagttttcatgcatattggtatgttctcctccaccagtcttacacactgcttttagataactttgtgctgctccatcttcctcttaattatattccagaggttttcaatttggtaaaatcaaagaaaatcattatttctaagtggtcttttattttttttcacagctgtaCGTGTACCTTGCAAcactttataattttattttgatgCAAAACAAGTGaaaagtaatacatttatattttgaataCTAACCTGTTTAACTAGTCTAAGCTgcactattactattatatagCATAAACTGTTTACCTCATAGTATTATTGTGCAGTacacaattgggacacagccctaACCTGCCAAACAATTCATATCACCTGTAAAAAAGCATATGTGCGCATGACCAGGGACTGAGGGGATTTAGACAAATGAAGAGACACACTAAACAAAACTTTTCAGTACAGATACCAACACCCTACTGGGGCTCCCAGCCTTTAGGTTTGAGGCAAAACACTAAAAAGATCATCACAGATTAAAGCAGCGATATACAGTGCATTCTCCACTTAATCATCACACTCTCTGAGCAAAAGCATAATTTAGGTGGTGGGAGATAAGATGCTCCTGCTACTACTGGAGCATTATAATTCAGTCTTCTCTGAACTGAACGTGGATTGTCTAAGTATGCAAATGGGGCCTAGATTAGACCAAAGTCTTCACACTTCCATACACGTGTCTAAACATGTGATCTGAAAGTGAAACAATAAggaaaaaacaccctaaaacatCAGATAGATCTTTACAAACCCTCTGTTCACCTCAGAAGAACAAATCTCCATGTAATACAGAAGCGGAACTAGATCCATATTGATACAAAAATAAGAACTAGAGAACAGGATATTTAAACACActcatataaatacaatttcaCAGTTGTGTGGGTCCATCATTTGGCGCAAAAGTGACAGGGAAGAAAAAGGACggggaaaaatacaaaaaataaaaataaaataaaattgaacaaacagacagaaaaacatcACTCTCCTTTGGCCTTCAGACCAAACATGTAGTTGTGAATCTAGAATGGGCCTTGTTCTCCACTTTATCAGGTCCCAATAGTAAAGATGCACCTTTTGTTCAATCTGTGCACAGACTGAGTGTTTCTAGTGGCACAGGAACAAAAACCCCACCACCTTTCACCTTCTTCCACACTTTAGAGTTCAGAGAAAGGGGTGGGGCTTAGTTGGCTGAGTGCTGGAGTGACATGGAAGGGGGAGTGGTGTCATGTGTCAGAGGTAGGGCTGATGTCCTGTGTGGGGCAGTCCTGAGGGGAGGAGCTATCTGGAGTGGGCAAGTTTGAAGAATGAGATGCTACATCAACTCCATCCATTCCGGAGGTGGTGCAGTTCATGCAACccTGTGTTTATCTCCTCTGGGACAGTGTGTCGATGGATCCAGGAATGCACCTCAGCTAGCTCCTCTTTCTGCTCCTGAGTGAACCAGGGCTGCATGGGCTGCAGCCGCATCAGCTTCTCCCTGTCCTCCTTCAGGACTTGGGCCTGGTCCCTGCAcaacaacacacatacacaaaataaaacctctggtcacacacacacacacacaagtccaCACAAaaaccctaacacacacacacagtacatatTCCTGCACTACACTCCACAAACACAACAACTAATGCTGGTGAACTTTCAaattaagaataagaataagtaataataataaaaaaaaaaaaaaactcaatacgCGTTAACCCTGGAACTACTTCTCCATCCACAAACTGTGCTCAAATAACATGATGTCACCTCAGCCGGCTGAATAACCGTGGTCTCATTGTAAGTCGTCACCTGAAATCACCTACCTCAGggtaacagggtggacagtgcAATGAGACAACTAGCTTGAAGAGAACTACCTCGGCGAGTGTGACTGGCAGCACTATAACTCTTTCTCCTGTGGACAGAGATGGCTCAGACAGTAATGTTCCTCTAATGTTCTCAGAGGAATTGTGAGGGGAACCCAGGTAAAGAGAAAGGCCCTTCAGGGCCCGCCTGGGGTTTGGTACCTGGGATGGATCTGATAGGTCATCATGACTGGTTCTGGTGTGTGTTGAATGATGGTCCATAAGGAGTTCTCCACACATTTGTCGAAGTTGGCGTGTTCCTGCACCTCCTGGCTCTTGTCTGAAGAGTCATTACTGGCAAAGTacttgctgctgttgctgctgcctGTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254122 lncRNA upstream 68247 4872365 ~ 4872778 (+) True G187400
TU253983 lncRNA upstream 139119 4801106 ~ 4801906 (+) True G187307
TU253981 lncRNA upstream 140517 4797616 ~ 4800508 (+) True G187305
TU253982 lncRNA upstream 143469 4796928 ~ 4797556 (+) True G187306
TU253944 lncRNA upstream 357695 4549931 ~ 4583330 (+) True G187281
TU254135 lncRNA downstream 28734 4978384 ~ 4989227 (+) True G187409
XR_002651588.1 lncRNA downstream 41891 4991541 ~ 5004012 (+) True LOC111195360
TU254204 lncRNA downstream 537438 5487088 ~ 5487811 (+) True G187473
TU254203 lncRNA downstream 539310 5488960 ~ 5489830 (+) True G187472
TU254202 lncRNA downstream 540435 5490085 ~ 5491257 (+) True G187471
XM_007251425.2 mRNA upstream 960 4936994 ~ 4940065 (+) True LOC103023081
XM_007251426.3 mRNA upstream 45984 4887519 ~ 4895041 (+) True tnfrsf9
XM_007251427.3 mRNA upstream 56659 4873029 ~ 4884366 (+) True LOC103023712
XM_022682286.1 mRNA upstream 71236 4859869 ~ 4869789 (+) True LOC103025087
XM_022682285.1 mRNA upstream 99260 4827408 ~ 4841765 (+) False LOC103024549
XM_022682298.1 mRNA downstream 522832 5472482 ~ 5486413 (+) True LOC103021734
XM_007251419.3 mRNA downstream 558658 5508308 ~ 5517565 (+) False fbxo2
XM_022682301.1 mRNA downstream 558744 5508394 ~ 5517565 (+) False fbxo2
XM_022682300.1 mRNA downstream 562161 5511811 ~ 5517565 (+) True fbxo2
XM_022682302.1 mRNA downstream 775693 5725343 ~ 5731344 (+) True wnt4
trnae-cuc_2 other upstream 150978 4789976 ~ 4790047 (+) True trnae-cuc_2
XR_002651654.1 other upstream 1017363 3923452 ~ 3923662 (+) True LOC111195456
TU253515 other upstream 1546182 3392387 ~ 3394843 (+) True G186978
TU253378 other upstream 1939010 2980497 ~ 3002015 (+) True G186880
XR_002651586.1 other upstream 4402809 510575 ~ 538216 (+) True cers5
XR_002651591.1 other downstream 1197035 6146685 ~ 6147519 (+) True LOC111195362
TU254736 other downstream 2143115 7092765 ~ 7098669 (+) False LOC103029365
trnaq-uug_4 other downstream 2242504 7192154 ~ 7192226 (+) True trnaq-uug_4
TU255026 other downstream 3162840 8112490 ~ 8113242 (+) False LOC111195452
XR_002651599.1 other downstream 3307148 8256798 ~ 8271689 (+) False agtrap

Expression Profile