RNA id: TU258058


Basic Information

Item Value
RNA id TU258058
length 302
lncRNA type inter_gene
GC content 0.32
exon number 2
gene id G190339
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 16565336 ~ 16565671 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tcaaataatgcaaataaaaaaaacaagttcatgttcataaagttttaagagttcaaaaataaatcaatatttggtggaataacccttgtcatcatgttctcctccaccagtcttacacactgcttttggataactttatgctgctttactcctggtgcaaaaattcaagcagttcagtttggtggtttgatggtttgtgatcatccatcttcctcttgattatattccagaggttttcaatttggtaaaattaaagaaaatcatcatttttaagtgctctcttatttttttccagagctgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU258048 lncRNA upstream 12126 16516761 ~ 16553210 (+) True G190329
TU258039 lncRNA upstream 130880 16376615 ~ 16434456 (+) True G190321
TU258037 lncRNA upstream 147523 16351391 ~ 16417813 (+) True G190319
TU258029 lncRNA upstream 255653 16302880 ~ 16309683 (+) True G190313
TU257768 lncRNA upstream 320475 16239534 ~ 16244861 (+) True G190155
TU258070 lncRNA downstream 92550 16658221 ~ 16658493 (+) True G190351
TU258072 lncRNA downstream 120494 16686165 ~ 16686512 (+) True G190353
TU258083 lncRNA downstream 231183 16796854 ~ 16800333 (+) True G190364
TU258092 lncRNA downstream 252257 16817928 ~ 16818483 (+) True G190372
TU258097 lncRNA downstream 265238 16830909 ~ 16877838 (+) False LOC111195387
XM_022682836.1 mRNA upstream 161920 16306852 ~ 16403416 (+) True fbln2
XM_022682464.1 mRNA upstream 329000 16193143 ~ 16236336 (+) True hdac11
XM_022682466.1 mRNA upstream 329000 16193143 ~ 16236336 (+) False hdac11
XM_022682465.1 mRNA upstream 329000 16193143 ~ 16236336 (+) False hdac11
XM_007233855.3 mRNA upstream 721066 15838457 ~ 15844270 (+) True LOC103030596
XM_007232371.3 mRNA downstream 39181 16604852 ~ 16610376 (+) True LOC103035562
XM_022682474.1 mRNA downstream 462577 17028248 ~ 17054064 (+) True LOC103037415
XM_022682475.1 mRNA downstream 530395 17096066 ~ 17101615 (+) True c22h12orf10
XM_007232363.3 mRNA downstream 538442 17104113 ~ 17107100 (+) True LOC103032680
XM_022682840.1 mRNA downstream 651105 17216776 ~ 17223278 (+) True LOC103038691
TU257697 other upstream 785500 15777805 ~ 15779836 (+) True G190109
TU257668 other upstream 808155 15710951 ~ 15757181 (+) False map1lc3a
TU257667 other upstream 844295 15710951 ~ 15721041 (+) True map1lc3a
TU257621 other upstream 1200336 15362692 ~ 15365000 (+) True G190050
TU257060 other upstream 2457228 14107302 ~ 14108108 (+) True G189621
TU258100 other downstream 309737 16875408 ~ 16877838 (+) True LOC111195387
TU258260 other downstream 554274 17119945 ~ 17123674 (+) True G190481
TU258275 other downstream 615451 17181122 ~ 17185128 (+) True G190484
TU258365 other downstream 918149 17483820 ~ 17493182 (+) True G190550
TU258513 other downstream 1456581 18022252 ~ 18041509 (+) True G190661

Expression Profile