G190339


Basic Information

Item Value
gene id G190339
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 16565336 ~ 16565671 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU258058
tcaaataatgcaaataaaaaaaacaagttcatgttcataaagttttaagagttcaaaaataaatcaatatttggtggaataacccttgtcatcatgttctcctccaccagtcttacacactgcttttggataactttatgctgctttactcctggtgcaaaaattcaagcagttcagtttggtggtttgatggtttgtgatcatccatcttcctcttgattatattccagaggttttcaatttggtaaaattaaagaaaatcatcatttttaagtgctctcttatttttttccagagctgta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU258058 True 302 lncRNA 0.32 2 16565336 16565671

Neighbor

gene id symbol gene type direction distance location
fbln2 fbln2 coding upstream 161920 16306852 ~ 16403416 (+)
hdac11 hdac11,LOC107727860,LOC107749433 coding upstream 329000 16193143 ~ 16236336 (+)
LOC103030596 LOC108415872 coding upstream 721066 15838457 ~ 15844270 (+)
LOC107196954 NA coding upstream 755310 15802619 ~ 15810026 (+)
LOC103032686 pcbp2,LOC108440343,LOC106582661,LOC106956729,LOC103464415,LOC105030566,LOC106571954 coding upstream 765400 15785446 ~ 15799936 (+)
LOC103035562 barx1,LOC106583841,LOC107576198,LOC107709546 coding downstream 39181 16604852 ~ 16610376 (+)
LOC103037415 alpl,LOC107691326,LOC107685635,LOC107749423 coding downstream 462577 17028248 ~ 17054064 (+)
c22h12orf10 LOC107570120 coding downstream 530395 17096066 ~ 17101615 (+)
LOC103032680 NA coding downstream 538442 17104113 ~ 17107100 (+)
LOC103038691 NA coding downstream 651105 17216776 ~ 17223278 (+)
G190329 NA non-coding upstream 12126 16516761 ~ 16553210 (+)
G190321 NA non-coding upstream 130880 16376615 ~ 16434456 (+)
G190319 NA non-coding upstream 147523 16351391 ~ 16417813 (+)
G190313 NA non-coding upstream 255653 16302880 ~ 16309683 (+)
G190155 NA non-coding upstream 320475 16239329 ~ 16244861 (+)
G190351 NA non-coding downstream 92550 16658221 ~ 16658493 (+)
G190353 NA non-coding downstream 120494 16686165 ~ 16686512 (+)
G190364 NA non-coding downstream 231183 16796854 ~ 16800333 (+)
G190372 NA non-coding downstream 252257 16817928 ~ 16818483 (+)
G190398 NA non-coding downstream 379746 16945417 ~ 16947039 (+)
G190109 acad9,LOC107551129,LOC107749438 other upstream 785500 15777805 ~ 15779836 (+)
map1lc3a map1lc3a,LOC107551126,LOC107685654 other upstream 808155 15710930 ~ 15757181 (+)
G190050 NA other upstream 1200336 15362692 ~ 15365000 (+)
LOC103040222 ankrd52,LOC105017093,LOC106583345,LOC106565408 other upstream 1721060 14797668 ~ 14844276 (+)
slc6a1 slc6a1,slc6a1b,LOC107670967,LOC107746710,LOC107697564 other upstream 2393715 14114204 ~ 14171621 (+)
LOC111195387 cstf1,LOC107555629,LOC107749426,LOC107685639 other downstream 265238 16830909 ~ 16877838 (+)
G190481 strip1,LOC106583081 other downstream 554274 17119945 ~ 17123674 (+)
G190484 irf6,LOC106565674 other downstream 615451 17181122 ~ 17185128 (+)
cept1 cept1,LOC103025726,LOC108413012 other downstream 868691 17434362 ~ 17446741 (+)
G190550 NA other downstream 918149 17483820 ~ 17493182 (+)

Expression


Co-expression Network