RNA id: XM_007242148.3


Basic Information

Item Value
RNA id XM_007242148.3
length 600
RNA type mRNA
GC content 0.55
exon number 4
gene id LOC103036551
representative True

Chromosome Information

Item Value
chromosome id NW_019172945.1
NCBI id APWO02000037.1
chromosome length 4505412
location 829266 ~ 832597 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTATAAAAGACCTCAGCTCCTGAGACAATGCACCTTCAGGTCCTACATTACCCCACAGAGAAGGCACGCCTTGCTCAGTCAGTCTGCAATCATGAAGTTCTTCCTCATCGCTGCCCTTGTTGTTGCTCTGGCCATCGGCTCTGAGTCTGCCAGCCTGGCCAAGAGAGAGGTGCCCGAGGAGCTGCAGAAGATGGGCCAGTACTTCCAGGGCCTGGTCGATGCTCTGAAGACAGTTGAGGGACCTGAGCTGGCCAACATGGCCAAGACTTACGTCGAGCAGAGCAGAGCCCAGTTCCAGCCCATGGTGGAGAAGCTCCACGAGCAGCTGAAGCTTTCCAACATCGACGAGCAGATCAAGCCACTGGCTGCCTCTCTGCAGGCCCAGATCTCCCCCTACACCGACCTGGTGCAGACCCAGGTGGAGGACGTGCTCAGGTTCATGGTTGACCAGACCAAGGCCATCCTGCCCGCCCAGTAAAAGCTCAGATAGAGGGATGTGAGAAACAGGTCTTTGGGGAAATCACCACCCTTTACCCCCCTTCCCCTTTCAGATTCCATCACACATCACTAATGTGAAACAATAAAGGGGTTTAAGGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468778 lncRNA upstream 6434 815162 ~ 822832 (+) False G340705
TU468779 lncRNA upstream 6434 815162 ~ 822832 (+) True G340705
TU468770 lncRNA upstream 94784 734269 ~ 734482 (+) True G340698
TU468769 lncRNA upstream 96118 731229 ~ 733148 (+) True G340697
TU468763 lncRNA upstream 110427 718510 ~ 718839 (+) True G340691
XR_002649817.1 lncRNA downstream 342139 1174736 ~ 1176161 (+) False LOC111192115
TU468889 lncRNA downstream 343267 1175864 ~ 1176578 (+) True LOC111192115
TU468905 lncRNA downstream 490696 1323293 ~ 1323693 (+) True G340804
TU468919 lncRNA downstream 599015 1431612 ~ 1432259 (+) True G340816
TU468929 lncRNA downstream 642334 1474931 ~ 1478664 (+) True G340818
XM_007242199.2 mRNA upstream 426463 398531 ~ 402803 (+) True LOC103026183
XM_022668744.1 mRNA upstream 619096 202287 ~ 210170 (+) True LOC111192137
XM_022668707.1 mRNA upstream 628481 191553 ~ 200785 (+) True LOC111192132
XM_007242162.2 mRNA upstream 646086 161568 ~ 183180 (+) True tmem176b
XM_022668694.1 mRNA upstream 668429 149818 ~ 160837 (+) True LOC111192126
XM_022668703.1 mRNA downstream 66360 898957 ~ 957666 (+) True ntrk1
XM_022668705.1 mRNA downstream 66360 898957 ~ 957666 (+) False ntrk1
XM_022668704.1 mRNA downstream 66360 898957 ~ 957666 (+) False ntrk1
XM_022668648.1 mRNA downstream 570776 1403373 ~ 1467711 (+) True LOC103024618
XM_022668649.1 mRNA downstream 588554 1421151 ~ 1467711 (+) False LOC103024618
TU468689 other upstream 142040 625226 ~ 687226 (+) True G340657
TU468531 other upstream 651997 161595 ~ 177269 (+) False tmem176b
TU468468 other upstream 705597 71821 ~ 123669 (+) True G340490
TU469073 other downstream 850945 1683542 ~ 1684918 (+) True G340904
TU469106 other downstream 1270383 2102980 ~ 2103427 (+) True G340921
XR_002649819.1 other downstream 2517846 3350443 ~ 3355766 (+) False LOC107197730
TU469514 other downstream 2692020 3524617 ~ 3548017 (+) True oxr1
XR_002649822.1 other downstream 2798727 3631324 ~ 3634237 (+) False LOC103021382

Expression Profile