RNA id: XM_022668707.1


Basic Information

Item Value
RNA id XM_022668707.1
length 1023
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC111192132
representative True

Chromosome Information

Item Value
chromosome id NW_019172945.1
NCBI id APWO02000037.1
chromosome length 4505412
location 191553 ~ 200785 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGCCGATTACTGTGACCAAGGCTGATGGGGTGACTGTGTTCACCATGACCCCCAACCCCAAGAGCAGATGCCCCCTGCTCTGCCAGATTCTGGGCACTCTGTGCTGCAGCCCGTTCTGCATGGTGTCTCGGAGCCTGAAGCAGCAGCTGGGAAAATCTCACACAGTTCTGGGGGCTCTACAGATTCTAGTTGGAGTGCTGAATCTGGGATTTGTGGGCATCATTAGATTTCTTGACCTGTACAGTGTGCTATGGGGTCTTGGCTTTGGGCTGGGAGCAATGtttattgCAGCTGGCATTGGGTGCATCCTTGTGGAGAAGTTTCCCAGCCCGTGCCTGaTCGGCTTTTCAATCCTGCTGAATGTGTTCAGTATTGGAATGGCTATAACTGGAATTGTGTTTTATTCAATGGACCTAACATATTTGCCTCTTTCTAACAACTGTAAGAAAGTATATGGATATGGAAACGGATATGGGTATGGACATGGAGATACGTATGGAGATAGATATCCTTATTACAAGACTACAACAGCTTCACCCACAATAAATGAcgtgattaaaaactgtgagcGCTACTTCTTCATGTTTAagGTGATTTTCGGAGGACTAAACATCATAATGATCATGTCTAGCATCCTAGAAATCTGCGTCACGATCAGCTCATGCGTTCTGTATGTGAAGGCTCTGTGCAAGAAGAACAAAGAAGACCGCAtgGAGGATTCGGAGCTTCAGAAGCCCCTTGTGGAGGAAGTCCTTTCCAGCCCAGCATGTTAGAAACACTACAATACCCATAATTCTTATGATAAcgtaatttatattaataactaTCTTTATGTTACTGTACTGCATAGTAAAATGTAATCCAACTATAGTAAAAAGCttctttattattaaatctTTTACAGATATTCTTTTTACTGCTGGTAGTATCATTTTGTAAGCTTACATGTAGAATTTTTCGTCGTATATGTACACtacatttgtgtttctttgatttatagACATAATAAAGATGTAATGCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468467 lncRNA upstream 80462 104345 ~ 111091 (+) True G340489
TU468479 lncRNA upstream 98520 90533 ~ 93033 (+) True G340496
TU468473 lncRNA upstream 103018 52278 ~ 88535 (+) False mex3a
TU468581 lncRNA downstream 124885 325670 ~ 340931 (+) True G340578
TU468585 lncRNA downstream 126008 326793 ~ 349692 (+) True G340580
TU468672 lncRNA downstream 273065 473850 ~ 474075 (+) True G340645
TU468674 lncRNA downstream 299372 500157 ~ 500498 (+) True G340647
TU468676 lncRNA downstream 336286 537071 ~ 543455 (+) True G340649
XM_007242162.2 mRNA upstream 8373 161568 ~ 183180 (+) True tmem176b
XM_022668694.1 mRNA upstream 30716 149818 ~ 160837 (+) True LOC111192126
XM_007242163.3 mRNA upstream 44907 131229 ~ 146646 (+) True LOC103041431
XM_015604023.2 mRNA upstream 122164 51843 ~ 69389 (+) True mex3a
XM_007242170.3 mRNA upstream 184231 63 ~ 7322 (+) True LOC103043481
XM_022668744.1 mRNA downstream 1502 202287 ~ 210170 (+) True LOC111192137
XM_007242199.2 mRNA downstream 197746 398531 ~ 402803 (+) True LOC103026183
XM_007242148.3 mRNA downstream 628481 829266 ~ 832597 (+) True LOC103036551
XM_022668703.1 mRNA downstream 698172 898957 ~ 957666 (+) True ntrk1
XM_022668705.1 mRNA downstream 698172 898957 ~ 957666 (+) False ntrk1
TU468531 other upstream 14284 161595 ~ 177269 (+) False tmem176b
TU468468 other upstream 67884 71821 ~ 123669 (+) True G340490
TU468689 other downstream 424441 625226 ~ 687226 (+) True G340657
TU469073 other downstream 1482757 1683542 ~ 1684918 (+) True G340904
TU469106 other downstream 1902195 2102980 ~ 2103427 (+) True G340921
XR_002649819.1 other downstream 3149658 3350443 ~ 3355766 (+) False LOC107197730
TU469514 other downstream 3323832 3524617 ~ 3548017 (+) True oxr1

Expression Profile