RNA id: TU468585


Basic Information

Item Value
RNA id TU468585
length 1123
lncRNA type inter_gene
GC content 0.50
exon number 3
gene id G340580
representative True

Chromosome Information

Item Value
chromosome id NW_019172945.1
NCBI id APWO02000037.1
chromosome length 4505412
location 326793 ~ 349692 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TATTTTTGATGATAAGCCCAGCTGTAGCCACAAAACAAATCCATGATAACTCCTTTCATGCTAGAGAAGATGTCCATATACTAACATCAAGTTTGGGTCTGGTTTATCTGCTGTGTGGATGTAGCCATATTAAAGTCACTTTGGTTTCTTTGATTGCTCCATTGCAAACTTTTAGAATATGAGAAGTTGCCTATATTATAAACACCCTTTCAAGTGCGTCTAGGTTCGGTCCTCTTCATCACATTGGTCCAGAACCTCTTGCATCTTGGCCTGAATGTCAATGACCTTTTGGGCCCATTTCTCCCGGACCTCATCCTCGTCGTCCTCCGTGACCGAGGTGTAGGCCATCAGTGCTATGAGGCCGATATGGAAGAGATTGGCCAGGTGAGAGCACCTAGCCTCCATCACCTTCCTGTTCCTGTCGCAGTGCTCCAGATAAACCTTCAGCAGGGGCCTGCCAAAGAGCGAACCAGTCCCCATGACCCCACGATAGTACACATCCAAGCTTAAGTCACTCTTGTCCCTTTCGTAGATCTTCTCAAAGTCCTCCATGTATCGGCCTGCATTTTCCGGGTCCAGCTTGACCCTCTCCACCATGGTGTTGAAGGCGCCGTACTGATGCTTGATGTATTCCTCATACTTTCCAAAGGTCTCGTTGACCTCGTCTATGCGAATCTGCCGCAGGGTCTGCTTGTTCTTCGCTGAGATGCTCTCCAGCTTCTCGTGGACCTGACGGAAGTCCTTGTCCACTTCCTTATCTTCTTCATCATCTCCCAGCCCCTTCCTCACAACCCCGACCAGGGAAGTGACGATGCCAAACAGGGGGTCTATGGAGGAGGCGAACTCTGAGATTTTCTCTACGTAGCCCAGAACCTTGATCGCCGTCTGCTTGATTTGCTCCTTGTCTGCCATGGATGCTGAGCTTTTCATTCACCAAGTCTTTGCTTCACTGCGATTGTTGCAGTCTTCTCCGGGGCGTGTACACACAGGCCTCCACTCACTGATACGCTCAGGATACTTCTCAGGTAGTTCCTCTCAGAGTTCCTTTTCAGAGAGCTACCTCCCTCTCCAAATTCCCAATCCGACTGTACTTCTTCTTCCCAGCAATCCCTGCAACACAGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468467 lncRNA upstream 215702 104345 ~ 111091 (+) True G340489
TU468479 lncRNA upstream 233760 90533 ~ 93033 (+) True G340496
TU468473 lncRNA upstream 238258 52278 ~ 88535 (+) False mex3a
TU468672 lncRNA downstream 124158 473850 ~ 474075 (+) True G340645
TU468674 lncRNA downstream 150465 500157 ~ 500498 (+) True G340647
TU468676 lncRNA downstream 187379 537071 ~ 543455 (+) True G340649
TU468692 lncRNA downstream 280176 629868 ~ 633351 (+) True G340660
TU468697 lncRNA downstream 280176 629868 ~ 633351 (+) False G340660
XM_022668744.1 mRNA upstream 116623 202287 ~ 210170 (+) True LOC111192137
XM_022668707.1 mRNA upstream 126008 191553 ~ 200785 (+) True LOC111192132
XM_007242162.2 mRNA upstream 143613 161568 ~ 183180 (+) True tmem176b
XM_022668694.1 mRNA upstream 165956 149818 ~ 160837 (+) True LOC111192126
XM_007242163.3 mRNA upstream 180147 131229 ~ 146646 (+) True LOC103041431
XM_007242199.2 mRNA downstream 48839 398531 ~ 402803 (+) True LOC103026183
XM_007242148.3 mRNA downstream 479574 829266 ~ 832597 (+) True LOC103036551
XM_022668703.1 mRNA downstream 549265 898957 ~ 957666 (+) True ntrk1
XM_022668705.1 mRNA downstream 549265 898957 ~ 957666 (+) False ntrk1
XM_022668704.1 mRNA downstream 549265 898957 ~ 957666 (+) False ntrk1
TU468531 other upstream 149524 161595 ~ 177269 (+) False tmem176b
TU468468 other upstream 203124 71821 ~ 123669 (+) True G340490
TU468689 other downstream 275534 625226 ~ 687226 (+) True G340657
TU469073 other downstream 1333850 1683542 ~ 1684918 (+) True G340904
TU469106 other downstream 1753288 2102980 ~ 2103427 (+) True G340921
XR_002649819.1 other downstream 3000751 3350443 ~ 3355766 (+) False LOC107197730
TU469514 other downstream 3174925 3524617 ~ 3548017 (+) True oxr1

Expression Profile