RNA id: TU468473


Basic Information

Item Value
RNA id TU468473
length 2582
lncRNA type sense_over
GC content 0.37
exon number 3
gene id mex3a
representative False

Chromosome Information

Item Value
chromosome id NW_019172945.1
NCBI id APWO02000037.1
chromosome length 4505412
location 51843 ~ 88535 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CATCCTGCAGGGCAAGAGCAAGTTGTGCGCGCTGTACGACGGCTCGGCAGGCGAGACTAAGGCGCGGGGCTGCAACATCACTGAGTGCGTCCCTGTGCCAAGCTCCGAGCATGTGGCCGAGATAGTGGGGAGGCaaggtgCTTTTTATTTACTGAGTGATGCCAAGGATGACTCTGTCAGGACaaaaacactgagaggaaccaagactctaAAGAAGAACCACCCCCCTATACTGGCTAACAGTATAGAGAATATAAGAAGgaacaaaagcaggaaaaatacaaaaaacaactgTCAAAATATGGTTAGACTTAAcctaaatttacttttaaaaacatattatacaGTCTGCTGTTGTAATAAAGCATTTGGAGCACAATAAAGCTGGAGTCAAATCGTAatgtggtatttatttattagtattaaagCTGACCTTTTCCCTGATAATGTTCATCTTTTAACAGCACTCAAAGCTCTCtgataaaacagtaaatctataTGGGTGCATTTTATTGCAATTTGCTACGAATATTACATAATGATTCAGACTCAACAGTTTAGTGTAACAAGAAGGAATATATTTAATCTGATCtcactatttaaaatgaaaagatcATATTGTAGAGTTCCATGAATGGCATCTTCCtcacatatttatatacactgGTTTGCATGTGGACACATTAGGATAGGcagataaatcatttttaaaggaaatatttcaacatttcttaaACACAATCTCTGTCCACCACATCTGTATCATAATGACAGATTCCCACATATGAAGATTTTAATACATGTGTCCTGTGCTTGTGAGTTAGGGTCTCTATGTGTTAAATTATTGAGCTTTGGTCACTACTTCACCAGCTGTCTTATTTtggactgttcacttgctgcctaatatatatatatattcatccCTTGACAGAaaccattgtaaatgaatatattCTGGTGGTGATGTAATGGCATTCACAGTGTCACACATGTACAGAAAATAtgtcacagaaggcattaccacccacagtggacagtgcagtggataaTAATGGTGACtggcggcatctggctagaattgtccacgTAAGCAGACAACAGACAAGCGACTCTAGCAGAAACCCCACCCACATCCCACAGGCCAGCGCAGTAGTCGTTATTCTATAATATTTGCTCAGTTTGTAATGTACATAATTAAAAAGTGGCATTTAAAGGGAAATGTTAGAGTGTAACAGTTGTTAAGGCCTTGGATTccctttatatatacacacatatatatccagtcaaaagtttggacacacctcttctcattcaaactttttttctttttttgattttttacattgtaaatttaatattgaagacattaaagctgatgctgattttgagtttgttaaacagatttttataaataccaagagtgttttctcagtgttttaaaggagttcctggaggtgctgaacaatagttgctgctcttTCTTCACGCCCtacatctcagttgatcaggggattgtggaggacaaacactttttttttttttttttttttttactgtttactacataattccatatgtgtcccttaaccAATACGGTGATGACGGCTcccagagctgaagctagtgttaCAGGttgtaaatagtgttttttaataagcttcttttgcactttttaaaaaagttattaatgcctcgttttaaatgccagggctctccagattctattaatgaggtgtggagctagtttgagcctggataatggtgtaaaaagtgacTTATCAGTGCAAATTATGCTCTGAAGCACCCTTTTGTAAAAAGTGCTGGGCAAACAGCACagaattactggatctcagaatgctgtgggagaacggaggtgtgctattcaacaaaggttagtactttttatcatgttttactacaacaaaagtctcCTTTGATTGTTTtcacatatttaatattattctgcaatatagaaaaataaattaaagaaagaaataaagaaaaccattgaattagaaggtgtgtccagacttttgactggtactgtatctcaAAATCATTCATAGAATTCAGCAACTGCCCACTGGCTTCAATTTTAAGTCTAATTTAAGTAAAAGGGTTTTCTGTTATTATACAAAAGAGTACTGAACACCTAGTCTTTGGTCATCTATTCTATTATGCAGATTAAGTCAATAGAGATCAggtcaaaaaaaacttttaaacttttttaagaattgtgAAACAATAAGACATACAAAAATACTTTCTCATGACAGTCATGCAGTCGTCACATGGCATGCAGAATACATCAGGTTATGTCAGTCATCGAAAAAGTGGTTCCTATGAATTTTTGGTGATTAAAAGTGAATGGAAGAGCCCTTTGTCCATTCATGGATGATGATGGAGAAGTTCATCTGGTCCTCTCTGCCTCTCTGCTGTTTCTCAAGAACGTCCTACAAGTTCTTACAGCAGGCCTTCTTCTCTTCCTGTGCGTCGGACTGCGCAGGCTGGGGGCTGGACAGTGACACGGCGTTGATTGACCCGCGGGTGACCTCTTTACTGCTCACCTTCTTATGGATTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468479 lncRNA downstream 1998 90533 ~ 93033 (+) True G340496
TU468467 lncRNA downstream 15810 104345 ~ 111091 (+) True G340489
TU468581 lncRNA downstream 237135 325670 ~ 340931 (+) True G340578
TU468585 lncRNA downstream 238258 326793 ~ 349692 (+) True G340580
TU468672 lncRNA downstream 385315 473850 ~ 474075 (+) True G340645
XM_007242170.3 mRNA upstream 44956 63 ~ 7322 (+) True LOC103043481
XM_007242163.3 mRNA downstream 42694 131229 ~ 146646 (+) True LOC103041431
XM_022668694.1 mRNA downstream 61283 149818 ~ 160837 (+) True LOC111192126
XM_007242162.2 mRNA downstream 73033 161568 ~ 183180 (+) True tmem176b
XM_022668707.1 mRNA downstream 103018 191553 ~ 200785 (+) True LOC111192132
XM_022668744.1 mRNA downstream 113752 202287 ~ 210170 (+) True LOC111192137
TU468462 other downstream 28761 117296 ~ 120344 (+) True G340488
TU468531 other downstream 73060 161595 ~ 177269 (+) False tmem176b
TU468689 other downstream 536691 625226 ~ 687226 (+) True G340657
TU469073 other downstream 1595007 1683542 ~ 1684918 (+) True G340904
TU469106 other downstream 2014445 2102980 ~ 2103427 (+) True G340921

Expression Profile