RNA id: TU468779


Basic Information

Item Value
RNA id TU468779
length 706
lncRNA type inter_gene
GC content 0.48
exon number 6
gene id G340705
representative True

Chromosome Information

Item Value
chromosome id NW_019172945.1
NCBI id APWO02000037.1
chromosome length 4505412
location 815162 ~ 822832 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTTACAAAGAAGGCTACACACTGCAGCTGGTGGCAATAcggaaaacagaaaataacaaaaacaccaaaatctAAAAACAGCCCATTAGAGAAACACATGCTGTCACATTGTGTGTGGAATACAAGGCTCTGTAAAAAGCAGAGTAGAGGAAATCAGCGTCGCCTTCTGTCTGGACTTCTGCTACGCCTCCTTCCACCCCTCCTCTTGCCCTTTGGTGGTCCCCGAACAAAGCACCAATCAACACCGATTGGCTGACCCATAAGATCTTGACCGTTCAGACCCTCCATGGCAGCCTGTGCCTCCTTGTACGTTTCATATTCCACCAGTGCGTAGCCCTTAAGGTAACCCGTTCTTCTGTCCAAGTTGAGATGCAGGTTCTTGATTTCTCCAAATTCAGAAAATTTGTCATGGATATCTTCTTCCGTTGCCTCCTCTTGAACGCCAGTCACAAACAGGATCCATCCTTCAACAGATCTTTGTGGGCCAGGCTCATCACCATCTTGTTCCACTGTATCATAGTCTTCTCTCACTCGTGACCTCGCTCCTTCCTCAGATCCAAATCCACGACCCTTCCTCTTCTTTGCCTTCTCCTTTAGCTTGTGGATGctctCATCACCATCCTCATCCATAGGAAAGTCTTCTCCTCCCGCTTCATGAAGATCCAGCACGTCCGCCATGATGCCTGTTCGTGTGAGCAGTGatgcgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468770 lncRNA upstream 80680 734269 ~ 734482 (+) True G340698
TU468769 lncRNA upstream 82014 731229 ~ 733148 (+) True G340697
TU468763 lncRNA upstream 96323 718510 ~ 718839 (+) True G340691
TU468710 lncRNA upstream 107544 706242 ~ 707618 (+) True G340672
TU468697 lncRNA upstream 181811 629868 ~ 633351 (+) False G340660
XR_002649817.1 lncRNA downstream 351904 1174736 ~ 1176161 (+) False LOC111192115
TU468889 lncRNA downstream 353032 1175864 ~ 1176578 (+) True LOC111192115
TU468905 lncRNA downstream 500461 1323293 ~ 1323693 (+) True G340804
TU468919 lncRNA downstream 608780 1431612 ~ 1432259 (+) True G340816
TU468929 lncRNA downstream 652099 1474931 ~ 1478664 (+) True G340818
XM_007242199.2 mRNA upstream 412359 398531 ~ 402803 (+) True LOC103026183
XM_022668744.1 mRNA upstream 604992 202287 ~ 210170 (+) True LOC111192137
XM_022668707.1 mRNA upstream 614377 191553 ~ 200785 (+) True LOC111192132
XM_007242162.2 mRNA upstream 631982 161568 ~ 183180 (+) True tmem176b
XM_022668694.1 mRNA upstream 654325 149818 ~ 160837 (+) True LOC111192126
XM_007242148.3 mRNA downstream 6434 829266 ~ 832597 (+) True LOC103036551
XM_022668703.1 mRNA downstream 76125 898957 ~ 957666 (+) True ntrk1
XM_022668705.1 mRNA downstream 76125 898957 ~ 957666 (+) False ntrk1
XM_022668704.1 mRNA downstream 76125 898957 ~ 957666 (+) False ntrk1
XM_022668648.1 mRNA downstream 580541 1403373 ~ 1467711 (+) True LOC103024618
TU468689 other upstream 127936 625226 ~ 687226 (+) True G340657
TU468531 other upstream 637893 161595 ~ 177269 (+) False tmem176b
TU468468 other upstream 691493 71821 ~ 123669 (+) True G340490
TU469073 other downstream 860710 1683542 ~ 1684918 (+) True G340904
TU469106 other downstream 1280148 2102980 ~ 2103427 (+) True G340921
XR_002649819.1 other downstream 2527611 3350443 ~ 3355766 (+) False LOC107197730
TU469514 other downstream 2701785 3524617 ~ 3548017 (+) True oxr1
XR_002649822.1 other downstream 2808492 3631324 ~ 3634237 (+) False LOC103021382

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00020235 True 937 mRNA 0.45 6 NC_007127.7 45922175 ~ 45930077 (+)