RNA id: TCONS_00012612


Basic Information

Item Value
RNA id TCONS_00012612
length 1965
RNA type mRNA
GC content 0.41
exon number 2
gene id XLOC_006506
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 12664866 ~ 12667220 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGATTTGTGACGTCAGGCTGCGCCGTCTGTTGACAGCCAACACCGGAAGTATCTCCAACAAGCCATCTGTTTCCCAGCCCTTCGGCCCCGTCTCAGGTCAAAATTAATCATTCTGTTTTTAGCATTAATATGTCAAATACTAATCGTATCGTAAATGATGCGGAGACACGTCATCATCGAGACTTCTTAACCGGGACGCGAGAACGGAGCGGGTGTCGACACCAGCATGAGCGcgctgtcaaacacacacacagagaactgAATGACCCCAGGGGAAGAGATAGACCACACAATGCTGAGCCATCGCAGGAACCAGCTGAACCGGAGGCCCCACAGGTGGATGACTGTGAGAAGATGGGCACTTTGTTCGGGGAGCTCAACAAGTGTTTGAGGGGTCTTGGATTCACCCAGCTCTACTTCGGAGAGAAGATTGTGGAGCCGGTGGTCGTGCTGGTGTTTTGGTTGCTTTTGTGGTTCCTTGGTATCCAAGCGCTTGGCCTCGTGGGAACTCTGTGCATCATTATCATTTACATCCAGAAATAGCAGACGAGAATATACAGATGAAGGACAGTTTTGCCACTTACAGCCAGTAGAGAGGAGATTGAGACTCCTTTCTGTAAACGACAAGCTCCACAACTCCGTTTACGCGGGTGTTGTTTGCTTTCTTGTAATGTGGGTATATATTCAAGAAGGTGAATTATTGAAGATAATCAGAGGATTTACTTTAATTGCTAGAATGATTCCACCAGTCTATGCGCTTTCATGCATAAGGCATTTGTGAAAAGCATGCTTCCCTTCACTCCTGATTGGTGCATAGAGATAGGATGACTGTCGTAACCTGTACAGGTTGAAGAGCTTTATTATAACTGGTTGTACATATCAGCTTGACAGTCATTTGAAATGAAAGTGGTATCCTTGTTGAATGTATTGCTGATGTGTTCCCAGGTTTCAGTCCTGTTTTCTCTACGCAATTGCACTAGAGGGCAACCTTCCTCATTCTTTAtaaaagagatagttcatccGAAACTGAAAATGATTTTGTCATTTACTcacttaaacactaaagaagataaaaaagactggaaactggtaaccattgacttccaaagtagaaaaaataaatactatggaagtcaatggttacaggttttcagctttctttaaaatatcttctttagtgtttggtAGCACAAAGAAACTCACAAAGCTTTAAAATAACTTGAGGGTGATTAAATAGTGAGtcgattttcatttttgggtgaactatcccttttaagatGTGTTAGGAAATCTAACAGGGATGAATAATTATTCTGAGTTAAAACTTGAATGTGTTAATACTACTGCATGTGAATGTTCTGGGGCTGCTGGGGTATTTTTGGACTTCGTCTGACAGTTTGAATTAAATACAGTTCTCCAAGAGTCTGAGCAGAGGAGGAATCTGTATTAAAACCAAACCTATCATGAAAAAGATCTACGTTATGCACTGTATTTTTGGATTTGTTTATTAACTGatgtttcttaaagggacagttcaccctaaattAAAAATGGACTGAGCATTTACTGGtaccaaacctttttttttctgttgtatacaaaagatgatattttgaagaatgttttgttccagggatgtccagactcagtcttggagggccggtgtcctgcagattttagctccaatttgcctcaacacacctgtacaGATGTTTCTGGAAAGCCTAGTAACAGCTTGATCatctagcccaggtgtgtctgattgaggttggaactaaactctgcaggacactggctttCCAGGACTAAGTTcggacacccctgttttaaacgGTTAGCAGTAGTAAAACAAAAtcattgcatatactattatcgtTATAATGATAATTTTCATATATTGTGCACACACTATGAATATCAATGCCTGCTGCTTTCCAACATCCATCAAAATTCTCTCTATCATCA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-524 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in intracellular membrane-bounded organelle. Orthologous to human FAM241A (family with sequence similarity 241 member A).

Ensembl:

ensembl_id ENSDART00000079594

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012611 lncRNA downstream 5101 12659113 ~ 12659765 (-) True XLOC_006505
TCONS_00012609 lncRNA downstream 18138 12644979 ~ 12646728 (-) True XLOC_006504
TCONS_00012608 lncRNA downstream 18149 12642268 ~ 12646717 (-) False XLOC_006504
TCONS_00013467 lncRNA downstream 77454 12586997 ~ 12587412 (-) True XLOC_006502
TCONS_00012602 lncRNA downstream 178816 12484347 ~ 12486050 (-) True XLOC_006499
TCONS_00013764 lncRNA upstream 81432 12748652 ~ 12756661 (-) True XLOC_006507
TCONS_00013765 lncRNA upstream 920076 13587296 ~ 13589826 (-) False XLOC_006510
TCONS_00012618 lncRNA upstream 993512 13660732 ~ 13661533 (-) True XLOC_006512
TCONS_00013766 lncRNA upstream 1070322 13737542 ~ 13740560 (-) True XLOC_006514
TCONS_00013767 lncRNA upstream 1345965 14013185 ~ 14015180 (-) True XLOC_006516
TCONS_00012610 mRNA downstream 4548 12653975 ~ 12660318 (-) False XLOC_006505
TCONS_00012606 mRNA downstream 18114 12633223 ~ 12646752 (-) False XLOC_006504
TCONS_00012607 mRNA downstream 19282 12633224 ~ 12645584 (-) False XLOC_006504
TCONS_00012605 mRNA downstream 61946 12591508 ~ 12602920 (-) True XLOC_006503
TCONS_00012604 mRNA downstream 83478 12543634 ~ 12581388 (-) True XLOC_006501
TCONS_00012613 mRNA upstream 326631 12993851 ~ 13030851 (-) True XLOC_006508
TCONS_00012614 mRNA upstream 546347 13213567 ~ 13294872 (-) True XLOC_006509
TCONS_00012617 mRNA upstream 993344 13660564 ~ 13662624 (-) False XLOC_006512
TCONS_00012620 mRNA upstream 1075982 13743202 ~ 13751017 (-) False XLOC_006515
TCONS_00012621 mRNA upstream 1076605 13743825 ~ 13754091 (-) True XLOC_006515
TCONS_00012601 other downstream 178874 12481378 ~ 12485992 (-) False XLOC_006499
TCONS_00012597 other downstream 275303 12378215 ~ 12389563 (-) True XLOC_006498
TCONS_00012595 other downstream 558972 12105778 ~ 12105894 (-) True XLOC_006496
TCONS_00012589 other downstream 690298 11974452 ~ 11974568 (-) True XLOC_006492
TCONS_00012573 other downstream 1099003 11565736 ~ 11565863 (-) True XLOC_006482
TCONS_00012615 other upstream 920076 13587296 ~ 13590570 (-) True XLOC_006510
TCONS_00012616 other upstream 977225 13644445 ~ 13644562 (-) True XLOC_006511
TCONS_00012619 other upstream 1003220 13670440 ~ 13670537 (-) True XLOC_006513
TCONS_00012624 other upstream 1717201 14384421 ~ 14384538 (-) True XLOC_006518
TCONS_00012658 other upstream 3640547 16307767 ~ 16307883 (-) True XLOC_006537

Expression Profile

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