RNA id: TU822


Basic Information

Item Value
RNA id TU822
length 211
lncRNA type intronic
GC content 0.46
exon number 1
gene id G710
representative True

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 2023761 ~ 2023971 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTCAAGGGATTTGTTCACCAAAATTTAAATGCTGTCTAGTTTGCCTTATTCCAAACTTGTGGAAAAAACATTTTTCCTTTTCTGTATAAAGCAAGGCTAAGTGAATTTATTGACCACTACTTTCCTGTCTACTACTCAACAATTACATATATTTTATATCTTATACCTTAAAACTGTGTTTTCTTCAATCAGAGGAATCAACATTTCAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU810 lncRNA upstream 104197 1919256 ~ 1919564 (+) True G700
TU809 lncRNA upstream 104819 1918732 ~ 1918942 (+) True G699
TU684 lncRNA upstream 115602 1767917 ~ 1908159 (+) False G579
TU829 lncRNA downstream 14062 2038033 ~ 2038258 (+) True G717
TU830 lncRNA downstream 14506 2038477 ~ 2038716 (+) True G718
TU831 lncRNA downstream 14886 2038857 ~ 2039092 (+) True G719
TU833 lncRNA downstream 16393 2040364 ~ 2040732 (+) True G721
TU1506 lncRNA downstream 135715 2159686 ~ 2160082 (+) True G1323
CI01000000_01996254_01997531.mRNA mRNA upstream 26144 1996074 ~ 1997617 (+) True CI01000000_01996254_01997531
CI01000000_01978179_01992602.mRNA mRNA upstream 30800 1978179 ~ 1992961 (+) True CI01000000_01978179_01992602
CI01000000_01916310_01925119.mRNA mRNA upstream 98371 1916052 ~ 1925390 (+) True CI01000000_01916310_01925119
CI01000000_01899373_01901550.mRNA mRNA upstream 122079 1899373 ~ 1901682 (+) True CI01000000_01899373_01901550
CI01000000_01898604_01899281.mRNA mRNA upstream 124480 1898042 ~ 1899281 (+) True CI01000000_01898604_01899281
CI01000000_02080057_02086228.mRNA mRNA downstream 55860 2079831 ~ 2087510 (+) True CI01000000_02080057_02086228
CI01000000_02092375_02096188.mRNA mRNA downstream 68322 2092293 ~ 2096188 (+) True CI01000000_02092375_02096188
CI01000000_02237986_02243555.mRNA mRNA downstream 213723 2237694 ~ 2243820 (+) True CI01000000_02237986_02243555
CI01000000_02334112_02352906.mRNA mRNA downstream 309584 2333555 ~ 2352912 (+) False CI01000000_02334112_02352906
CI01000000_02496792_02498535.mRNA mRNA downstream 472773 2496744 ~ 2498594 (+) True CI01000000_02496792_02498535
TU678 other upstream 114953 1815453 ~ 1908808 (+) False G579
TU531 other upstream 590907 1425121 ~ 1432854 (+) True G435
TU431 other upstream 1346824 671842 ~ 676937 (+) True G350
TU325 other upstream 1516689 503209 ~ 507072 (+) True G252
TU3086 other downstream 2429807 4453778 ~ 4454232 (+) True G2774
TU3177 other downstream 2702015 4725986 ~ 4726482 (+) False G2850
TU7529 other downstream 8180860 10204831 ~ 10321679 (+) True G6811
TU7538 other downstream 8403252 10427223 ~ 10433018 (+) True G6820
TU7753 other downstream 8954518 10978489 ~ 10980872 (+) True G7018

Expression Profile