RNA id: TCONS_00013010


Basic Information

Item Value
RNA id TCONS_00013010
length 2130
RNA type mRNA
GC content 0.49
exon number 4
gene id XLOC_006756
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 33394116 ~ 33398735 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atttaagtaacagagaagggttgtttgtttgcacGAATATTATTAAGAACGGATCACGCTTGTAGCTGTTATTATTTTTCTGAACACATTTCGTCAACTTTCTCGCTCGTTCTCATGCCCGCTGCGCCGGAATGCAGGCTGTCCAATCATGGCCGGATCATGAAATGTGTGACTTTTTTACTTTTGCTCCCTGAAACGTTAAAGAAGTTGAAGCGGGCAAGCAAGCACCCCGGCAGGCTGTCTGTGTGCTATAACATCTTAACTCTTTCCCTGAAGAAGAGGATGGCGGCGGAACTGTACCCGGTCAGCGATCACGCCACACTGCAGAAGAGCGGCGCCGTGATGCTGAGTTTGCCGGAGAAGAAGCGGAGCGTGGAGCCGGTATCACAGACCACCGCGTCCATCGCCACCACACCGACCACCGAgcaaaacatcaacaacaacaacgtggAGATTCCCAGCTGGCACTCCGCGCACCCGACATTACGCGAAAGAAATGCACTGATGTTCAATAATGAACAAATGGCAGATGTCCATTTCATTGTTGGACCTCCTGGTGAATCTCAAAGGGTCCCGGCACACAAGTACGTGCTGGCAGTGGGAAGCtctgtattctgtgccatgtttTACGGGGATCTCGCAGAAGGGGACTCTGATATCCATATTCCAGATGTGGAACCCGCTGCTTTTCTCATCCTGCTCAAATACATGTACAGTGATGAGATAGAGCTGGCACCGGACACAGTTTTGGCTACACTCTATGCTGCAAAGAAATACCTGGTATCTGCTCTGGCTCGTGCATGTGTGGGTTTCCTCGAGACGAGTCTGGAGGCGCGAAATGCATGCGTTCTGCTATCTCAGAGTCGTCTGTTTGAGGAGCCGGAGCTCACACAGAGATGCTGGGAGGTGATTGACGCCCAGGCAGAGCTCGCACTGCGCTCTGAAGGCTTCTCTGAGATTGACCTGCCAACACTGGAGAGCATCTTGCAAAGGGAAACCCTGAATGTGAAGGAGTCTGTGGTGTTCCAGGCCGTCCTGGGATGGGCCGATGCAGAATGTCGGAGACAAGGTGTAAGCCCTACCTCGCAGAACCAGCGCTCTGTGTTGGGAAAAGCGTTGCACCTTGTGCGCCTGCCTTCCATGACACTCCAGGAGTTTGCAGACGGAGCCGCGCAGGTGGACATTTTAACCCTTGAGGAAACACACAGCATCTTTTTGTGGTACACAGCAGCTACAAAACCTTCATTGGGATTCCCGGTTAATGCCAGAAAGGGTCTGACGGCGCAACGCTGCCACCGCTTCCAATCCTCTGCCTACCGAAGCAACCAGTGGCGCTACCGTGGACGCTGTGACAGCATCCAGTTCGCTGTGGACAAGCGCGTGTTTATTGCTGGACTTGGCCTGTATGGCTCCAGCGGAGGGAAAGCGGAATATAGTGTGAGAATTGAACTAAAGAGACAGGGAGTGCTTCTGGCACAAAACTTGACCAAATTTGTGTCAGACGGCTCTAGCTCAACATTCCCAGTGTGGTTCGAGCACCCTGTACAGGTTGAGCAGGATGCCTTCTACACCGTTAGCGCCGTTCTAGATGGGAGTGAGCTAAGCTACTTTGGACAAGAGGGAATGACAGAAGTGCAGTGTGGGAAAGTGACCTTCCAGTTTCAGTGTTCCTCTGACAGTACTAATGGGACAGGGGTGCAAGGGGGACAGATTCCAGAACTGATTTTTTATGCATGAGTACTTGGACTGATCCATTAATGAAGAGAGAGTAGGGGGGTTCCCCTCTCAAATAAATGCCTTTACTCACAATTTAGCTGCAAGACACAACAGATGGAGGACATGCGACACCCTCTGatatgattcttttttttttttgtctcacatGTAATGGTATGCTCCCCAATGTTATTTATTTCGtagaacattattttaaaaacacactttaatttaaacatattatATTTCTAATTATTCATAACCTGCCTTAGTACATTAGTCAATGGGCAGTTTGCACTTGAAACTAGGCAGCTTTTACTCTGTCTTATTTAATTGATCATTTGTTGACAGCTTGATGCTGAGAAAAGGGTTTCAAGAGCctgaaaaaatataaacatgttgTTTCTATTCATC

Function

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0007399 nervous system development biological_process
GO:0022008 neurogenesis biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-080218-26 Acts upstream of or within regulation of neurogenesis. Predicted to be located in cytoplasm and nucleus. Predicted to be active in cytosol. Is expressed in nervous system; neuroblasts; posterior neural keel; posterior neural plate; and spinal cord neural tube. Orthologous to human BTBD6 (BTB domain containing 6).

Ensembl:

ensembl_id ENSDART00000103628

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013002 lncRNA downstream 92946 33264663 ~ 33301170 (-) True XLOC_006752
TCONS_00013864 lncRNA downstream 126516 33261131 ~ 33267600 (-) False XLOC_006752
TCONS_00013001 lncRNA downstream 126531 33261131 ~ 33267585 (-) False XLOC_006752
TCONS_00013863 lncRNA downstream 126532 33261131 ~ 33267584 (-) False XLOC_006752
TCONS_00013003 lncRNA downstream 126581 33261131 ~ 33267535 (-) False XLOC_006752
TCONS_00013865 lncRNA upstream 53703 33452438 ~ 33463644 (-) True XLOC_006757
TCONS_00013866 lncRNA upstream 58788 33457523 ~ 33459318 (-) True XLOC_006758
TCONS_00013013 lncRNA upstream 218276 33617011 ~ 33619922 (-) False XLOC_006759
TCONS_00013014 lncRNA upstream 222535 33621270 ~ 33622673 (-) True XLOC_006759
TCONS_00013018 lncRNA upstream 260973 33659708 ~ 33662432 (-) True XLOC_006761
TCONS_00013009 mRNA downstream 31925 33342455 ~ 33362191 (-) True XLOC_006755
TCONS_00013008 mRNA downstream 72575 33320604 ~ 33321541 (-) True XLOC_006754
TCONS_00013007 mRNA downstream 73058 33320063 ~ 33321058 (-) False XLOC_006754
TCONS_00013004 mRNA downstream 76718 33314673 ~ 33317398 (-) False XLOC_006753
TCONS_00013012 mRNA upstream 212972 33611707 ~ 33639050 (-) False XLOC_006759
TCONS_00013015 mRNA upstream 246678 33645413 ~ 33654931 (-) True XLOC_006760
TCONS_00013016 mRNA upstream 260136 33658871 ~ 33662523 (-) False XLOC_006761
TCONS_00013019 mRNA upstream 266570 33665305 ~ 33667922 (-) True XLOC_006762
TCONS_00013020 mRNA upstream 271201 33669936 ~ 33671694 (-) False XLOC_006763
TCONS_00012961 other downstream 798896 32588552 ~ 32595220 (-) False XLOC_006734
TCONS_00012947 other downstream 1699069 31694931 ~ 31695047 (-) True XLOC_006722
TCONS_00012944 other downstream 1747110 31636732 ~ 31647006 (-) False XLOC_006720
TCONS_00012942 other downstream 1814552 31579448 ~ 31579564 (-) True XLOC_006718
TCONS_00012938 other downstream 1953176 31424590 ~ 31440940 (-) False XLOC_006716
TCONS_00013011 other upstream 212968 33611703 ~ 33639021 (-) False XLOC_006759
TCONS_00013017 other upstream 260973 33659708 ~ 33662353 (-) False XLOC_006761
TCONS_00013028 other upstream 1239894 34638629 ~ 34638746 (-) True XLOC_006768
TCONS_00013029 other upstream 1245415 34644150 ~ 34644281 (-) True XLOC_006769
TCONS_00013036 other upstream 1784259 35182994 ~ 35194759 (-) True XLOC_006773

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000012_07312430_07315865.mRNA True 2412 mRNA 0.48 4 CI01000012 7311672 ~ 7315917 (+)