RNA id: TCONS_00013865


Basic Information

Item Value
RNA id TCONS_00013865
length 226
lncRNA type read_through
GC content 0.44
exon number 2
gene id XLOC_006757
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 33452438 ~ 33463644 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTGGTTCGGGTGGTTAATCAGAGCACACTGCATACATATCAGCTGCTGATCTTTACAACAGTACAGCTCCAGAGGCTTATGATGTTGAGAGCAGATCTGGTCCAGTAGACGTGGTGAGGCATTGGCCAATTTGTGCCACTTTAACGCAGGAGATGTATAATGACTTTGGATGTGAGATTCACAGTAAGAAGCCAAACACACTAGACAAGATTTAATGGCTTTTAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013002 lncRNA downstream 151268 33264663 ~ 33301170 (-) True XLOC_006752
TCONS_00013864 lncRNA downstream 184838 33261131 ~ 33267600 (-) False XLOC_006752
TCONS_00013001 lncRNA downstream 184853 33261131 ~ 33267585 (-) False XLOC_006752
TCONS_00013863 lncRNA downstream 184854 33261131 ~ 33267584 (-) False XLOC_006752
TCONS_00013003 lncRNA downstream 184903 33261131 ~ 33267535 (-) False XLOC_006752
TCONS_00013013 lncRNA upstream 153367 33617011 ~ 33619922 (-) False XLOC_006759
TCONS_00013014 lncRNA upstream 157626 33621270 ~ 33622673 (-) True XLOC_006759
TCONS_00013018 lncRNA upstream 196064 33659708 ~ 33662432 (-) True XLOC_006761
TCONS_00013024 lncRNA upstream 218952 33682596 ~ 33683869 (-) True XLOC_006764
TCONS_00013867 lncRNA upstream 1741653 35205297 ~ 35289099 (-) False XLOC_006774
TCONS_00013010 mRNA downstream 53703 33394116 ~ 33398735 (-) True XLOC_006756
TCONS_00013009 mRNA downstream 90247 33342455 ~ 33362191 (-) True XLOC_006755
TCONS_00013008 mRNA downstream 130897 33320604 ~ 33321541 (-) True XLOC_006754
TCONS_00013007 mRNA downstream 131380 33320063 ~ 33321058 (-) False XLOC_006754
TCONS_00013004 mRNA downstream 135040 33314673 ~ 33317398 (-) False XLOC_006753
TCONS_00013012 mRNA upstream 148063 33611707 ~ 33639050 (-) False XLOC_006759
TCONS_00013015 mRNA upstream 181769 33645413 ~ 33654931 (-) True XLOC_006760
TCONS_00013016 mRNA upstream 195227 33658871 ~ 33662523 (-) False XLOC_006761
TCONS_00013019 mRNA upstream 201661 33665305 ~ 33667922 (-) True XLOC_006762
TCONS_00013020 mRNA upstream 206292 33669936 ~ 33671694 (-) False XLOC_006763
TCONS_00012961 other downstream 857218 32588552 ~ 32595220 (-) False XLOC_006734
TCONS_00012947 other downstream 1757391 31694931 ~ 31695047 (-) True XLOC_006722
TCONS_00012944 other downstream 1805432 31636732 ~ 31647006 (-) False XLOC_006720
TCONS_00012942 other downstream 1872874 31579448 ~ 31579564 (-) True XLOC_006718
TCONS_00012938 other downstream 2011498 31424590 ~ 31440940 (-) False XLOC_006716
TCONS_00013011 other upstream 148059 33611703 ~ 33639021 (-) False XLOC_006759
TCONS_00013017 other upstream 196064 33659708 ~ 33662353 (-) False XLOC_006761
TCONS_00013028 other upstream 1174985 34638629 ~ 34638746 (-) True XLOC_006768
TCONS_00013029 other upstream 1180506 34644150 ~ 34644281 (-) True XLOC_006769
TCONS_00013036 other upstream 1719350 35182994 ~ 35194759 (-) True XLOC_006773