RNA id: CI01000004_04315741_04317415.mRNA


Basic Information

Item Value
RNA id CI01000004_04315741_04317415.mRNA
length 2282
RNA type mRNA
GC content 0.43
exon number 6
gene id CI01000004_04315741_04317415
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 4314776 ~ 4317616 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATAAATCAGGCTGACAGCCCGAACTCCCAGGCAGAGAATGAGAGAATACCGAACACAAAATAATAAGTCAAGTAACTGGACCTGCCAGTCCGATATCATACATTTTAATTTCTGTTGGTGTCCAGGTACGTAACTTTCTATTATTATTCATCAGGCTTTCATTTGTGTGCACTGCACGAATGTGCTTTTGTGAACGCTAATATGGTTATGCAACTTCGTTCTTTTGTTGATAGTGAGTTTTATTTTAACCAAAATTGACTTGTTGTTTTGTGATATTGCCGCTGTTTATCAATACTTCACGCTAGGATGTAATATACTACCGTGCTGTAACCATGGCTACAGGCTGCTATCGGTGTATCCGGGGATGTGCAGGAAAGCGTCGAGTTGAATGCTCTCAGCTAACGTTACTTTGAGCAGCAATAATGCTTTTTGCGCTGACCTGCTGATTTGTGCGATCAATATTGATAGTGGTTTTCCATACTGATCGAACAACCCTTTCACAAGTGAATGCAAAGAGTTCCCAATGCAGATTGCAAAGCACGTGGTCTAGTCTTTCCCAACCCCTTTAAACTGTATTTGTAAGACTCCAGTGCCCACGCAAGCCAACGATTTTATACAGCAATTAATCAGGATTGGCTAAATTATTTTCTGCTTTCATTTTAACATTTTTAAAATCAATCTTTCTAAATTACCTGGTTGGAAATAAATGGTCTCTAATCTATTCAGTGCTGTTTGTTATATTTCTAGGCTTCCACTGAGATTACCTGTTTGATTAAATTATCATCTGTTTGTTTGTGCTTGGTCTTTTACTTAAACTATTGATCCCTGTGCTGAATGTATGTGTTAATGCTTCTCCAAGTGACTGCATGTTTAAGGAAGTACAATATATTCAATATTCTTGTGAGACTTCTTAATGTTGACCATCTGTTTTCCTCCTGTTTAGGTGTTTTATAGTAATAAAAAATGGCTACGTCTGCCAGTGCTCAGTTGAGTAAAGTGGTAAAACGGCAGTATATGGAACTGCCTCAGGGAGACAAAGTACAAGCCATGTATATCTGGATCGACGGAACCGGAGAAGGACTGCGATGCAAAACCAGGACGCTGGACTCTGAGCCTAAAAGCATTGAAGATCTTCCTGAGTGGAATTTTGATGGTTCCAGCACGTATCAATCTGAAGGCTCCAACAGTGACATGTATCTCATCCCCTCAGCCATGTTTAGGGATCCTTTCCGCAAAGACCCCAACAAATTGGTCTTGTGTGAGGTGCTCAAGTACAACCGAAAGCCTGCTGAAACCAACCATCGTCATACATGTAAAAAGATCATGGAAATGGTAGACCATCAGATCCCTTGGTTTGGCATGGAGCAGGAGTACACTATCCTGGGTACAGATGGACATCCGTTTGGTTGGCCCTCCAATGGGTTCCCTGGTCCCCAAGGACCTTATTACTGTGGAGTTGGAGCAGATAAAGCCTATGGCAGGGACATCGTGGAGGCACATTACAAAGCCTGCCTGTATGCTGGTGTGGTGATCTGTGGAACCAATGCTGAAGTTATGCCAGCCCAGTGGGAATTCCAGATTGGCCCCTGTGAAGGCATCAACATGGGGGATCACTTGTGGGTAGCTCGTTTCATCTTGCACAGAGTTTGTGAAGACTTCGGTGTGGTAGCTTCATTTGATCCTAAGCCGATCCCAGGCAACTGGAATGGCGCTGGTTGCCACACTAACTTTAGCACCAAGGAAATGCGGGAAGATGGTGGGCTGAAATGCATTGAGGAGTGTATTGATAAGCTTGGAAAGAGGCACAACTACCACATCCGCGCCTATGATCCAAAGGGAGGCCTGGACAATGCTCGTAGACTGACTGGCCACCATGAAACCTCCAACATACATGAGTTCTCAGCAGGCGTAGCCAACCGTGGTGCTAGTATCCGCATCCCGCGAACAGTGGGACAAGAGAAGAAGGGCTACTTTGAGGACCGCCGTCCATCTGCCAACTGTGACCCCTATGCGGTCACTGAGGCCCTGATTCGCACATGTTTGCTTGATGAAGAGGGTGAAGAACCCGTGGACTACTAGATATCTCTTCTTCTGGACTGAACTTCCCTCCCCTTCTTGCCATACTCACTTTTTATTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATGGCCATCAAGCCAAATTAGTACTGTATCTTATTTTCTATCAGGGTGGTTCTAACCTGGCATTTTAATATCGCTGAAGTTGACTGGTCAACTTAACATTTTAAGA

Function

GO:

id name namespace
GO:0070062 extracellular exosome cellular_component

KEGG:

id description
K01915 glnA, GLUL; glutamine synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30523 lncRNA upstream 146527 4168046 ~ 4168249 (+) True G27044
TU30504 lncRNA upstream 216058 4098327 ~ 4098718 (+) True G27027
TU30502 lncRNA upstream 232461 4080971 ~ 4082315 (+) True G27025
TU30501 lncRNA upstream 236190 4078271 ~ 4078586 (+) True G27024
TU30500 lncRNA upstream 236991 4077566 ~ 4077785 (+) True G27023
TU30615 lncRNA downstream 3543 4321159 ~ 4321368 (+) True G27133
TU30620 lncRNA downstream 17429 4335045 ~ 4335330 (+) True G27138
TU30628 lncRNA downstream 37701 4355317 ~ 4355544 (+) True G27146
TU30665 lncRNA downstream 92828 4410444 ~ 4411305 (+) True G27166
TU30658 lncRNA downstream 118565 4436181 ~ 4436502 (+) True G27159
CI01000004_04231304_04239652.mRNA mRNA upstream 74653 4231211 ~ 4240123 (+) True CI01000004_04231304_04239652
CI01000004_04172679_04173047.mRNA mRNA upstream 140424 4171654 ~ 4174352 (+) True CI01000004_04172679_04173047
CI01000004_04123289_04123846.mRNA mRNA upstream 190813 4122624 ~ 4123963 (+) True CI01000004_04123289_04123846
CI01000004_04048829_04053849.mRNA mRNA upstream 260206 4045928 ~ 4054570 (+) True CI01000004_04048829_04053849
CI01000004_03934726_03935639.mRNA mRNA upstream 378906 3933685 ~ 3935870 (+) True CI01000004_03934726_03935639
CI01000004_04400735_04404462.mRNA mRNA downstream 82806 4400422 ~ 4404786 (+) True CI01000004_04400735_04404462
CI01000004_04412723_04413196.mRNA mRNA downstream 93985 4411601 ~ 4413196 (+) True CI01000004_04412723_04413196
CI01000004_04414110_04428551.mRNA mRNA downstream 96494 4414110 ~ 4428551 (+) True CI01000004_04414110_04428551
CI01000004_04498877_04532504.mRNA mRNA downstream 181261 4498877 ~ 4533086 (+) True CI01000004_04498877_04532504
CI01000004_04535801_04536013.mRNA mRNA downstream 217642 4535258 ~ 4536509 (+) True CI01000004_04535801_04536013
TU29692 other upstream 762330 3551048 ~ 3552446 (+) True CI01000004_03550525_03552621
TU29632 other upstream 792383 3509017 ~ 3522393 (+) True G26245
TU29335 other upstream 1555838 2758456 ~ 2758938 (+) True CI01000004_02745885_02768971
TU29329 other upstream 1578008 2736536 ~ 2736768 (+) True G25992
TU29214 other upstream 1741727 2548075 ~ 2573049 (+) True G25882
TU31414 other downstream 1055209 5372825 ~ 5373803 (+) False G27805
TU31416 other downstream 1055209 5372825 ~ 5373803 (+) False G27805
TU31417 other downstream 1055209 5372825 ~ 5373803 (+) False G27805
TU31418 other downstream 1055209 5372825 ~ 5373803 (+) True G27805
TU31830 other downstream 1414973 5732589 ~ 5733001 (+) True G28165

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00030731 False 1974 mRNA 0.43 7 NC_007113.7 18988407 ~ 18992350 (+)