RNA id: TU39165


Basic Information

Item Value
RNA id TU39165
length 135
lncRNA type sense_over
GC content 0.37
exon number 1
gene id G34507
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 14771247 ~ 14771381 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAGCACAGATGAAACAGAGAGCTTCAGTCAGAACTAAGACAGAGAGACAGAATACATGTTAAAATATTAATATCTTTATCTCAGCAATGGAAAAATGGATGATTAGTACTCTTTTCCTCACAGCACAGATTTTTGTGTGCTGGGGGCAAGACAGAGTTGAACAGCCTTCAAGAGAAATGACTGCAAATGAAGAGGATCAAATTACTTTGACGTGTAATTACACTACCAAAGCTGCAGATAATAATGTTTATCTTTTCTGGTACAAACAGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39163 lncRNA downstream 2716 14768084 ~ 14768531 (-) True CI01000004_14758580_14768474
TU39125 lncRNA downstream 5090 14766045 ~ 14766157 (-) True G34481
TU39158 lncRNA downstream 13017 14757697 ~ 14758230 (-) True CI01000004_14756092_14758171
TU39155 lncRNA downstream 14593 14756376 ~ 14756654 (-) True CI01000004_14756092_14758171
TU39122 lncRNA downstream 64127 14706723 ~ 14707120 (-) True G34479
TU39166 lncRNA upstream 2681 14774282 ~ 14774641 (-) False CI01000004_14775109_14792782
TU39121 lncRNA upstream 34400 14806001 ~ 14806506 (-) True G34478
TU39193 lncRNA upstream 46125 14817726 ~ 14818156 (-) True CI01000004_14815294_14818132
TU39117 lncRNA upstream 66088 14837689 ~ 14838322 (-) True G34474
TU39111 lncRNA upstream 114224 14885825 ~ 14888056 (-) True G34468
CI01000004_14758580_14768474.mRNA mRNA downstream 2567 14758528 ~ 14768680 (-) False CI01000004_14758580_14768474
CI01000004_14756092_14758171.mRNA mRNA downstream 13010 14755814 ~ 14758237 (-) False CI01000004_14756092_14758171
CI01000004_14754775_14755334.mRNA mRNA downstream 15498 14754747 ~ 14755749 (-) False CI01000004_14754775_14755334
CI01000004_14749034_14751685.mRNA mRNA downstream 17651 14748304 ~ 14753596 (-) False CI01000004_14749034_14751685
CI01000004_14742838_14744316.mRNA mRNA downstream 26740 14742807 ~ 14744507 (-) False CI01000004_14742838_14744316
CI01000004_14775109_14792782.mRNA mRNA upstream 2683 14774284 ~ 14792784 (-) False CI01000004_14775109_14792782
CI01000004_14794085_14794548.mRNA mRNA upstream 22431 14794032 ~ 14794593 (-) True CI01000004_14794085_14794548
CI01000004_14802126_14805324.mRNA mRNA upstream 29700 14801301 ~ 14805738 (-) True CI01000004_14802126_14805324
CI01000004_14808034_14808645.mRNA mRNA upstream 36337 14807938 ~ 14808969 (-) False CI01000004_14808034_14808645
CI01000004_14809409_14811408.mRNA mRNA upstream 37622 14809223 ~ 14811709 (-) True CI01000004_14809409_14811408
TU39156 other downstream 14593 14755938 ~ 14756654 (-) False CI01000004_14756092_14758171
TU39154 other downstream 19528 14751171 ~ 14751719 (-) True CI01000004_14749034_14751685
TU39147 other downstream 26911 14743852 ~ 14744336 (-) True CI01000004_14742838_14744316
TU39139 other downstream 48028 14723108 ~ 14723219 (-) True CI01000004_14722691_14723147
TU39120 other upstream 10530 14782131 ~ 14782656 (-) True CI01000004_14775109_14792782
TU39186 other upstream 36451 14808052 ~ 14808529 (-) True CI01000004_14808034_14808645
TU39197 other upstream 56029 14827630 ~ 14828123 (-) True CI01000004_14827536_14831360
TU39317 other upstream 239760 15011361 ~ 15025221 (-) True G34632
TU39354 other upstream 279575 15051176 ~ 15052775 (-) False G34668

Expression Profile