RNA id: TU35621


Basic Information

Item Value
RNA id TU35621
length 497
lncRNA type antisense_over
GC content 0.43
exon number 1
gene id G31457
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 10930308 ~ 10930804 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAGAAGCTGAGTGGCTCGGGGCTCTCAGGACTCGGGCATTTTTCAAAGTTGAGCGAATCATCAGGTGGGTAGAAGGAATCGTCTGACACAATGCTCTTGCTATCCGGTAGTTCAGAAAAGTCCAACTCCTCAAACTCTTGGTAGATGTCGTCATCATCATCATCATCATAAAGATGGTGGTCTTCATCATCTGCATAATAAGAGTCCTCTGTTGGCTCCACAGAATTGGAGCTCTGTATGAAGGACTCATTGTTCCAGCCTCTTGCTTGGTTGACACTGGTGCCATATTGGTGATCTTTGACCAGATGTACAACTCCTGCAACACCATTTTCAGTTATTAGCACCATTTAACTACCCGACTGGTGGAACACAAAAACAAAAATCTTGTAGGATCCAGAATGAGACTGTCACATAATGAATGGTAATCCTAAACTCCAGTTATTGACACGAGTAATGAAGAAACCCACTCGAACCAGTCAAAGACCTTTTCCATATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35615 lncRNA downstream 2203 10926284 ~ 10928105 (-) True G31452
TU35617 lncRNA downstream 8184 10921435 ~ 10922124 (-) True G31454
TU35620 lncRNA downstream 10667 10916899 ~ 10919641 (-) True G31456
TU35619 lncRNA downstream 16786 10907322 ~ 10913522 (-) True G31455
TU35402 lncRNA downstream 28922 10901129 ~ 10901386 (-) True G31271
TU35630 lncRNA upstream 3494 10934298 ~ 10934707 (-) True G31466
TU35670 lncRNA upstream 131866 11062670 ~ 11067886 (-) True G31484
TU35676 lncRNA upstream 138421 11069225 ~ 11069723 (-) True G31486
TU35734 lncRNA upstream 257678 11188482 ~ 11188976 (-) True G31542
TU35775 lncRNA upstream 400507 11331311 ~ 11331569 (-) True G31580
CI01000004_10884499_10886045.mRNA mRNA downstream 44263 10884426 ~ 10886045 (-) True CI01000004_10884499_10886045
CI01000004_10847650_10847940.mRNA mRNA downstream 82313 10847557 ~ 10847995 (-) True CI01000004_10847650_10847940
CI01000004_10788659_10809214.mRNA mRNA downstream 120503 10788659 ~ 10809805 (-) True CI01000004_10788659_10809214
CI01000004_10766385_10766860.mRNA mRNA downstream 163448 10766340 ~ 10766860 (-) True CI01000004_10766385_10766860
CI01000004_10757852_10760211.mRNA mRNA downstream 169166 10757543 ~ 10761142 (-) True CI01000004_10757852_10760211
CI01000004_10944147_11018487.mRNA mRNA upstream 11573 10942377 ~ 11018487 (-) True CI01000004_10944147_11018487
CI01000004_11043026_11046108.mRNA mRNA upstream 112076 11042880 ~ 11046108 (-) True CI01000004_11043026_11046108
CI01000004_11052319_11059170.mRNA mRNA upstream 120590 11051394 ~ 11059170 (-) True CI01000004_11052319_11059170
CI01000004_11073846_11086948.mRNA mRNA upstream 142875 11073679 ~ 11086948 (-) True CI01000004_11073846_11086948
CI01000004_11172493_11174547.mRNA mRNA upstream 241411 11172215 ~ 11175867 (-) True CI01000004_11172493_11174547
TU35313 other downstream 179667 10746437 ~ 10750641 (-) True G31203
TU34309 other downstream 1523387 9377937 ~ 9406921 (-) True G30316
TU33669 other downstream 2572181 8354498 ~ 8358127 (-) False G29746
TU33670 other downstream 2572181 8354498 ~ 8358127 (-) True G29746
TU33567 other downstream 2964808 7964364 ~ 7965500 (-) True G29656
TU36279 other upstream 476661 11407465 ~ 11412907 (-) True CI01000004_11407198_11412220
TU36455 other upstream 845715 11776519 ~ 11780951 (-) True G32150
TU36531 other upstream 1445364 12376168 ~ 12384780 (-) True G32207
TU38237 other upstream 3619996 14550800 ~ 14551284 (-) True CI01000004_14543631_14551256
TU38247 other upstream 3637989 14568793 ~ 14569264 (-) True G33746

Expression Profile