RNA id: TU39362


Basic Information

Item Value
RNA id TU39362
length 327
lncRNA type intronic
GC content 0.36
exon number 1
gene id G34674
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15061471 ~ 15061797 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGTATTAAAAACATCGTTGAAACAGCCGACGTGACTGCAGTGGTTCAACCTTAATGTTATGAAGCGACAAGAATACTTCGCACAAAAACAAAACAAAAACAAAAAAATAACGACTAATATCTTCTCTTCTGTGTTATTCTCATACTTTGTTTACACATGATCAGCTTTGGCCAATACTGAGCCGGCATTCGAACGTAAACACAGAAGCCTTCACTATGCTTACTGCGGCAACTACATAAGGATAATGACAGGGAAGAGAAGATAATGTTGAATAAAGTCGTTATTTTTGTTTTGTTTTTGCACATAAAAAGTATTCTCGTCACTTCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39361 lncRNA downstream 4859 15056278 ~ 15056612 (-) True G34673
TU39358 lncRNA downstream 7364 15053863 ~ 15054107 (-) True G34670
TU39351 lncRNA downstream 12331 15048712 ~ 15049140 (-) True G34666
TU39349 lncRNA downstream 22561 15038592 ~ 15038910 (-) True G34664
TU39348 lncRNA downstream 29098 15031991 ~ 15032373 (-) True G34663
TU39372 lncRNA upstream 43668 15105465 ~ 15105702 (-) True G34684
TU39255 lncRNA upstream 48184 15109981 ~ 15146962 (-) True G34575
TU39374 lncRNA upstream 51798 15113595 ~ 15115349 (-) True G34685
TU39394 lncRNA upstream 118177 15179974 ~ 15180249 (-) True G34701
TU39331 lncRNA upstream 161864 15223661 ~ 15223942 (-) True G34646
CI01000004_14999971_15002640.mRNA mRNA downstream 58831 14999275 ~ 15002640 (-) True CI01000004_14999971_15002640
CI01000004_14951433_14957539.mRNA mRNA downstream 103630 14951176 ~ 14957841 (-) True CI01000004_14951433_14957539
CI01000004_14897662_14906408.mRNA mRNA downstream 155045 14897250 ~ 14906426 (-) True CI01000004_14897662_14906408
CI01000004_14860344_14863053.mRNA mRNA downstream 198023 14860286 ~ 14863448 (-) True CI01000004_14860344_14863053
CI01000004_14846825_14850092.mRNA mRNA downstream 209940 14846785 ~ 14851531 (-) True CI01000004_14846825_14850092
CI01000004_15063428_15066310.mRNA mRNA upstream 1631 15063428 ~ 15066310 (-) True CI01000004_15063428_15066310
CI01000004_15068206_15086386.mRNA mRNA upstream 5958 15067755 ~ 15086519 (-) True CI01000004_15068206_15086386
CI01000004_15086759_15087492.mRNA mRNA upstream 24888 15086685 ~ 15087533 (-) False CI01000004_15086759_15087492
CI01000004_15159447_15160043.mRNA mRNA upstream 97611 15159408 ~ 15160043 (-) True CI01000004_15159447_15160043
CI01000004_15186236_15193312.mRNA mRNA upstream 124142 15185939 ~ 15195460 (-) True CI01000004_15186236_15193312
TU39354 other downstream 8696 15051176 ~ 15052775 (-) False G34668
TU39355 other downstream 9602 15051176 ~ 15051869 (-) True G34668
TU39317 other downstream 36250 15011361 ~ 15025221 (-) True G34632
TU39197 other downstream 233348 14827630 ~ 14828123 (-) True CI01000004_14827536_14831360
TU39186 other downstream 252942 14808052 ~ 14808529 (-) True CI01000004_14808034_14808645
TU39323 other upstream 24874 15087179 ~ 15090358 (-) True G34638
TU39411 other upstream 219219 15281016 ~ 15281649 (-) True G34718
TU39318 other upstream 725589 15787386 ~ 15787897 (-) True G34633
TU39241 other upstream 770776 15833158 ~ 15833275 (-) True G34569
TU39503 other upstream 798816 15860613 ~ 15863748 (-) True G34796

Expression Profile