RNA id: TU39374


Basic Information

Item Value
RNA id TU39374
length 529
lncRNA type inter_gene
GC content 0.30
exon number 2
gene id G34685
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15113595 ~ 15115349 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCAAAATGAAGTTCGAAACAGCTTGTCAAAGTGAACTCTATTTTGTTACTGAGAGAAAAGCGTGCAGCACATATTTACATATCCATCTAAATGTCTTTCACTAACAGTATATCGCTGCTCACGTATTTTGAACTTCGTTTTACCCCTAATCAAAGAACGAAAAAGAACTTTGCCATGACTATATCGGGGCCTTAACAGTATTTTTCTGTTAAAATTACTATATATCACAGTGTACACTGTAAAAAAAAAAAAAAAAAAGAAAAAAAGAAAATCTGGTAAAATTTACGGTAAAAAAAAAAAAAAAAAAACGGCAGCTGTGGTTGGCAAAACTTTACCGTAAAAATACGGTAGCAGCGTTTTAGGTTTCACGGGACAGCACTGTCTATTTTACAGTTCAAAACCATATAATTTAAAGGTTTATATTGTAATAATTACGGTTCATAACTGTTTATTTTATGCACTGTAAAAAATTCTGTTAAATGTACGATAAAAAAAAAACTTTCATTAACTGATATAATGTTAATTTACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39372 lncRNA downstream 7893 15105465 ~ 15105702 (-) True G34684
TU39362 lncRNA downstream 51798 15061471 ~ 15061797 (-) True G34674
TU39361 lncRNA downstream 56983 15056278 ~ 15056612 (-) True G34673
TU39358 lncRNA downstream 59488 15053863 ~ 15054107 (-) True G34670
TU39351 lncRNA downstream 64455 15048712 ~ 15049140 (-) True G34666
TU39394 lncRNA upstream 64625 15179974 ~ 15180249 (-) True G34701
TU39331 lncRNA upstream 108312 15223661 ~ 15223942 (-) True G34646
TU39250 lncRNA upstream 131157 15246506 ~ 15254180 (-) True G34572
TU39404 lncRNA upstream 144095 15259444 ~ 15259772 (-) True G34711
TU39406 lncRNA upstream 144931 15260280 ~ 15262403 (-) True G34713
CI01000004_15086759_15087492.mRNA mRNA downstream 26062 15086685 ~ 15087533 (-) False CI01000004_15086759_15087492
CI01000004_15068206_15086386.mRNA mRNA downstream 27076 15067755 ~ 15086519 (-) True CI01000004_15068206_15086386
CI01000004_15063428_15066310.mRNA mRNA downstream 47285 15063428 ~ 15066310 (-) True CI01000004_15063428_15066310
CI01000004_14999971_15002640.mRNA mRNA downstream 110955 14999275 ~ 15002640 (-) True CI01000004_14999971_15002640
CI01000004_14951433_14957539.mRNA mRNA downstream 155754 14951176 ~ 14957841 (-) True CI01000004_14951433_14957539
CI01000004_15159447_15160043.mRNA mRNA upstream 44059 15159408 ~ 15160043 (-) True CI01000004_15159447_15160043
CI01000004_15186236_15193312.mRNA mRNA upstream 70590 15185939 ~ 15195460 (-) True CI01000004_15186236_15193312
CI01000004_15217903_15228632.mRNA mRNA upstream 102389 15217738 ~ 15228736 (-) True CI01000004_15217903_15228632
CI01000004_15255165_15256033.mRNA mRNA upstream 139594 15254943 ~ 15258227 (-) True CI01000004_15255165_15256033
CI01000004_15300222_15308848.mRNA mRNA upstream 184311 15299660 ~ 15308941 (-) True CI01000004_15300222_15308848
TU39323 other downstream 23237 15087179 ~ 15090358 (-) True G34638
TU39354 other downstream 60820 15051176 ~ 15052775 (-) False G34668
TU39355 other downstream 61726 15051176 ~ 15051869 (-) True G34668
TU39317 other downstream 88374 15011361 ~ 15025221 (-) True G34632
TU39197 other downstream 285472 14827630 ~ 14828123 (-) True CI01000004_14827536_14831360
TU39411 other upstream 165667 15281016 ~ 15281649 (-) True G34718
TU39318 other upstream 672037 15787386 ~ 15787897 (-) True G34633
TU39241 other upstream 717224 15833158 ~ 15833275 (-) True G34569
TU39503 other upstream 745264 15860613 ~ 15863748 (-) True G34796
TU39656 other upstream 1286396 16401745 ~ 16421506 (-) True G34934

Expression Profile