RNA id: TU39358


Basic Information

Item Value
RNA id TU39358
length 245
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G34670
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15053863 ~ 15054107 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCAAATTATTATTTTTGTTAGGACAAATTGTTAATGTTAACACCATCAGCATTGCGTGACTGTGTATCTAGTGTGTATTAGCGTTACCTGTAGATTTCAATTTCTGTACAGTCTAATCACTAACGTTAATTTGTCATACCATACAATCTGCCATCAAAATGATAAGTTTAGTTATTGCAGCTGCTGTGAGAAAAGGCTAGAAATGATCCGCCTCACATGCGTTATAGCCTACTAGCTGGGACTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39351 lncRNA downstream 4723 15048712 ~ 15049140 (-) True G34666
TU39349 lncRNA downstream 14953 15038592 ~ 15038910 (-) True G34664
TU39348 lncRNA downstream 21490 15031991 ~ 15032373 (-) True G34663
TU39346 lncRNA downstream 23122 15030445 ~ 15030741 (-) True G34661
TU39320 lncRNA downstream 58824 14980342 ~ 14995039 (-) True G34635
TU39361 lncRNA upstream 2171 15056278 ~ 15056612 (-) True G34673
TU39362 lncRNA upstream 7364 15061471 ~ 15061797 (-) True G34674
TU39372 lncRNA upstream 51358 15105465 ~ 15105702 (-) True G34684
TU39255 lncRNA upstream 55874 15109981 ~ 15146962 (-) True G34575
TU39374 lncRNA upstream 59488 15113595 ~ 15115349 (-) True G34685
CI01000004_14999971_15002640.mRNA mRNA downstream 51223 14999275 ~ 15002640 (-) True CI01000004_14999971_15002640
CI01000004_14951433_14957539.mRNA mRNA downstream 96022 14951176 ~ 14957841 (-) True CI01000004_14951433_14957539
CI01000004_14897662_14906408.mRNA mRNA downstream 147437 14897250 ~ 14906426 (-) True CI01000004_14897662_14906408
CI01000004_14860344_14863053.mRNA mRNA downstream 190415 14860286 ~ 14863448 (-) True CI01000004_14860344_14863053
CI01000004_14846825_14850092.mRNA mRNA downstream 202332 14846785 ~ 14851531 (-) True CI01000004_14846825_14850092
CI01000004_15063428_15066310.mRNA mRNA upstream 9321 15063428 ~ 15066310 (-) True CI01000004_15063428_15066310
CI01000004_15068206_15086386.mRNA mRNA upstream 13648 15067755 ~ 15086519 (-) True CI01000004_15068206_15086386
CI01000004_15086759_15087492.mRNA mRNA upstream 32578 15086685 ~ 15087533 (-) False CI01000004_15086759_15087492
CI01000004_15159447_15160043.mRNA mRNA upstream 105301 15159408 ~ 15160043 (-) True CI01000004_15159447_15160043
CI01000004_15186236_15193312.mRNA mRNA upstream 131832 15185939 ~ 15195460 (-) True CI01000004_15186236_15193312
TU39354 other downstream 1088 15051176 ~ 15052775 (-) False G34668
TU39355 other downstream 1994 15051176 ~ 15051869 (-) True G34668
TU39317 other downstream 28642 15011361 ~ 15025221 (-) True G34632
TU39197 other downstream 225740 14827630 ~ 14828123 (-) True CI01000004_14827536_14831360
TU39186 other downstream 245334 14808052 ~ 14808529 (-) True CI01000004_14808034_14808645
TU39323 other upstream 32564 15087179 ~ 15090358 (-) True G34638
TU39411 other upstream 226909 15281016 ~ 15281649 (-) True G34718
TU39318 other upstream 733279 15787386 ~ 15787897 (-) True G34633
TU39241 other upstream 778466 15833158 ~ 15833275 (-) True G34569
TU39503 other upstream 806506 15860613 ~ 15863748 (-) True G34796

Expression Profile