RNA id: TU39372


Basic Information

Item Value
RNA id TU39372
length 238
lncRNA type inter_gene
GC content 0.28
exon number 1
gene id G34684
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15105465 ~ 15105702 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGTAATTTATTTCTCTGATGCAATGCTGAATTTTCTTTCAGTCTTCAGTGTCACATGATCCTTCAGAAATCATTCTAATATGCTGATTTGCTGCTCAAGAAACATTTCTGATTATTAATCAATGTGCTGTTTAATATTTTTGAGGAAAATGTGATCAGTTCAATGTGTTCTTGCTGAATAAATTATTATTTTCTTTCTTTCAAAAGAAAAAAAAAAGGGAAATGACTCCAAAAATTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39362 lncRNA downstream 43668 15061471 ~ 15061797 (-) True G34674
TU39361 lncRNA downstream 48853 15056278 ~ 15056612 (-) True G34673
TU39358 lncRNA downstream 51358 15053863 ~ 15054107 (-) True G34670
TU39351 lncRNA downstream 56325 15048712 ~ 15049140 (-) True G34666
TU39349 lncRNA downstream 66555 15038592 ~ 15038910 (-) True G34664
TU39255 lncRNA upstream 4279 15109981 ~ 15146962 (-) True G34575
TU39374 lncRNA upstream 7893 15113595 ~ 15115349 (-) True G34685
TU39394 lncRNA upstream 74272 15179974 ~ 15180249 (-) True G34701
TU39331 lncRNA upstream 117959 15223661 ~ 15223942 (-) True G34646
TU39250 lncRNA upstream 140804 15246506 ~ 15254180 (-) True G34572
CI01000004_15086759_15087492.mRNA mRNA downstream 17932 15086685 ~ 15087533 (-) False CI01000004_15086759_15087492
CI01000004_15068206_15086386.mRNA mRNA downstream 18946 15067755 ~ 15086519 (-) True CI01000004_15068206_15086386
CI01000004_15063428_15066310.mRNA mRNA downstream 39155 15063428 ~ 15066310 (-) True CI01000004_15063428_15066310
CI01000004_14999971_15002640.mRNA mRNA downstream 102825 14999275 ~ 15002640 (-) True CI01000004_14999971_15002640
CI01000004_14951433_14957539.mRNA mRNA downstream 147624 14951176 ~ 14957841 (-) True CI01000004_14951433_14957539
CI01000004_15159447_15160043.mRNA mRNA upstream 53706 15159408 ~ 15160043 (-) True CI01000004_15159447_15160043
CI01000004_15186236_15193312.mRNA mRNA upstream 80237 15185939 ~ 15195460 (-) True CI01000004_15186236_15193312
CI01000004_15217903_15228632.mRNA mRNA upstream 112036 15217738 ~ 15228736 (-) True CI01000004_15217903_15228632
CI01000004_15255165_15256033.mRNA mRNA upstream 149241 15254943 ~ 15258227 (-) True CI01000004_15255165_15256033
CI01000004_15300222_15308848.mRNA mRNA upstream 193958 15299660 ~ 15308941 (-) True CI01000004_15300222_15308848
TU39323 other downstream 15107 15087179 ~ 15090358 (-) True G34638
TU39354 other downstream 52690 15051176 ~ 15052775 (-) False G34668
TU39355 other downstream 53596 15051176 ~ 15051869 (-) True G34668
TU39317 other downstream 80244 15011361 ~ 15025221 (-) True G34632
TU39197 other downstream 277342 14827630 ~ 14828123 (-) True CI01000004_14827536_14831360
TU39411 other upstream 175314 15281016 ~ 15281649 (-) True G34718
TU39318 other upstream 681684 15787386 ~ 15787897 (-) True G34633
TU39241 other upstream 726871 15833158 ~ 15833275 (-) True G34569
TU39503 other upstream 754911 15860613 ~ 15863748 (-) True G34796
TU39656 other upstream 1296043 16401745 ~ 16421506 (-) True G34934

Expression Profile