RNA id: TU39522


Basic Information

Item Value
RNA id TU39522
length 308
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G34814
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15928443 ~ 15928750 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGAGTGCACCGGAAGGGCTGCCGATTTCGCATAGTTTGTGCTGCTGTTTAATAATCTTTTGAAATGTAGCAAACTGGCAGCTCCAGTAGTAATGAATATTTATGTTGAACTAGCATGTTCAAACCTTTTAAACGATTTAATGATTAATTAAAAAGGAATTTATACCTGTATGATAATGCTGGACCAGCGCGGTTTGGAAAATGAATGGATGATTGATTCAGCTGCGGGCGCCATCTCCTGGCAAGACGCGGGAATTCATTCAGCGCGCGACTCTCACAGTGCATTATGGGTATTCTCTAGACATTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39519 lncRNA downstream 2182 15926010 ~ 15926261 (-) True G34811
TU39301 lncRNA downstream 17772 15906913 ~ 15910671 (-) True G34616
TU39509 lncRNA downstream 41030 15887137 ~ 15887413 (-) True G34801
TU39316 lncRNA downstream 41989 15885237 ~ 15886454 (-) True G34631
TU39507 lncRNA downstream 50693 15877268 ~ 15877750 (-) True G34799
TU39265 lncRNA upstream 1625 15930375 ~ 15944664 (-) False G34583
TU39266 lncRNA upstream 1625 15930375 ~ 15944664 (-) True G34583
TU39538 lncRNA upstream 70069 15998819 ~ 15999147 (-) True G34830
TU39544 lncRNA upstream 90808 16019558 ~ 16023123 (-) True G34836
TU39545 lncRNA upstream 94494 16023244 ~ 16024781 (-) True G34837
CI01000004_15922924_15923872.mRNA mRNA downstream 4571 15922726 ~ 15923872 (-) True CI01000004_15922924_15923872
CI01000004_15911104_15915972.mRNA mRNA downstream 12424 15910936 ~ 15916019 (-) True CI01000004_15911104_15915972
CI01000004_15881212_15881809.mRNA mRNA downstream 44751 15880863 ~ 15883692 (-) False CI01000004_15881212_15881809
CI01000004_15836936_15841048.mRNA mRNA downstream 87395 15836462 ~ 15841048 (-) False CI01000004_15836936_15841048
CI01000004_15832789_15836192.mRNA mRNA downstream 92239 15832584 ~ 15836204 (-) False CI01000004_15832789_15836192
CI01000004_15956601_15962195.mRNA mRNA upstream 27250 15956000 ~ 15962930 (-) True CI01000004_15956601_15962195
CI01000004_15965178_15990162.mRNA mRNA upstream 36370 15965120 ~ 15990175 (-) True CI01000004_15965178_15990162
CI01000004_15991836_15995032.mRNA mRNA upstream 62890 15991640 ~ 15995184 (-) True CI01000004_15991836_15995032
CI01000004_15999644_16005705.mRNA mRNA upstream 70745 15999495 ~ 16006425 (-) True CI01000004_15999644_16005705
CI01000004_16079875_16086958.mRNA mRNA upstream 151125 16079875 ~ 16087211 (-) True CI01000004_16079875_16086958
TU39503 other downstream 64695 15860613 ~ 15863748 (-) True G34796
TU39241 other downstream 92212 15833158 ~ 15833275 (-) True G34569
TU39318 other downstream 140546 15787386 ~ 15787897 (-) True G34633
TU39411 other downstream 646794 15281016 ~ 15281649 (-) True G34718
TU39323 other downstream 838085 15087179 ~ 15090358 (-) True G34638
TU39656 other upstream 472995 16401745 ~ 16421506 (-) True G34934
TU39713 other upstream 573975 16502725 ~ 16515974 (-) True G34982
TU39734 other upstream 600692 16529442 ~ 16533008 (-) False G34995
TU39739 other upstream 608445 16537195 ~ 16541278 (-) True G34999
TU39636 other upstream 649917 16578667 ~ 16617614 (-) True G34916

Expression Profile