RNA id: TU39266


Basic Information

Item Value
RNA id TU39266
length 2214
lncRNA type antisense_over
GC content 0.33
exon number 11
gene id G34583
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15930375 ~ 15944664 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGTGATTTACTGCACTTTTTAGACACAGAAGGAAGGCTGGACAATCCCTTCTCCGGCTAATGTCACATAAGGTCACATCCTGTCTTAACAAAGAAAGAAGGTATGACTAATGACCTTGAGGAAAAGCCTGCTTAGCACCTTTAGGTCCTATCACAGTGGGACAAACAATCCATCCACATATTAGTACAAATAAACATTGAGACAATAACAACAAATTCAACAGATGGATGTACACTTAAAATAATGTTGCTGCTCCCTCTGACGATCTTACAAATTTTTGGTTACATTTTTTATGCTTGAAAGTCAGGTCCTTTCCCAAATGTATAATTTACCGGCCAATTACAGTATTGTCCTTACGATTGAAAGAAATGGATGGCAATGAACTGAAAGCAATATTGCTAATTGTTTTGGTTTTATAAGTGATGTCAACATTTGGAAGTGAATATCTGAAGGTCTAAGAGAGAGCATGGTCTTTGAATTAATCATTGGGTCAATGGGAGATAGAATGATGAGTGCATTCCTAGATATGGTGGAACAAGGTGACAGTTAAATGATGACATTTTTAACCTCGTGATTTCCGACAAAAAATATTAAAGGAATTTTTATAACGTTGATGATTCAGACAGTCGCAATTAGACAGACTTTAGTTTGGACAATACATAGCATGTAAGATGGTAAAAGTTTAATCATCGTCTTCATCGTCGTCGTCGTCATCATCGTCGTCGTCGTCATCGTCGTCGTCATCGTCGTCGTCGTCATCATCGTCGTCATCATCGTCGTCGTCATCGTCGTCGTCATCATCGTCATCATCATCGTCGTCATCATCGTCGTCGTCATCATCGTCGTCGTCGTCGTCGTCATCATCGTCGTCATCGTCGTCATCATCGTCGTCATCATCGTCGTCATCATCATCGTCATCATCATCATCGTCGTCGTCATCGTCGTCATCATCATCATCGTCATCATCATCGTCATCATCATCAGGATCGATTTTGTTCGATAGCACATCCTCCAGCCAATCCTCCAGCTCATCAACTGTTGGCATGTCGTCATCATCATCCATATCAAACCAGATACTTTCAGCATCATCAACCTCCACTACACCAATCTGAGGTGAGGACAGGTCAATGTCGAAGGTCTTCTCCCAATAGGGGACAAGCAGAGGGAAGTCATCGGGGTCGATCCAGACGATGCTCAGGTCGGGATTGTCGGTGTTATCCTCTGCCACTTCCTTCACGATTTCAAGGAATTCAAAGCCGTCTGGGTCGCCCTCCTCAGCAAAAGCAATTATATGCTCACCATCAAGAGCATCCGCCCAGATCTCATACATGTTGTGTGGCTGCATTTTCCTCAGTGTTGGCCTGTCATTGTCCTCAATGAATTCAACAAGTTCTTTCTCGCTGTAGGGTTTACCAGGGATGACGACGGGTTCATCCATGAAGGGCTCATAGAAGTCCACCTCATTCAACTTCAAGCCTAGTTTTGTAGCAACCTTTGGACTAAAGGTGGCAAAGAACTTGATGTGTGGATGAAACTCCTCTGCTGCGTCCTCATATTCATGGTAGTGGTCAGATTTCTCACTCTTGAAGAAGCCTATCAGCTTGATATCCTCCTCAATATTATGGAAACCTTTCAACTCACGCACATTGCTAATGATCTCAACTGGATCCTCAATGACATCATAGAGGAACTCCACCAGTGTGTCCGCAGCAAGCTCTCCATCGTACTCAATGACCTCATCCTCAAAGAAGATATAGATACTGTCAGCCTCATCAAGACCTAGTTTCTTGGCAACAGCTCTGTCTGTCTTCTCATCGAGTAGGCCAATCCCGATGTCCTCGTCGTCAAGATCCTCCAGGACTTGTGCAGCAAGCTCAAGGGCCAGCTCCTCAATCTGAAACTGTTTCTGGGCGACTCTGCTGGATCCTACGTGCTCATGGTAGTACACCACCATCACGTCATATTTCTTCATCACAGACTTGTAATTCTTGGCATTAAGCTCGTGAACGCGGTCCTTTCCATCGTACTCAGGGATGTCCATACCTTTCTGGCCCCATGACAGCTGCCCGAAGGTCAGAAGGAGCCCAAGGAACACTAGGTTCCACTTCATGATTCAATATACTTAAGTAGGGAAAACTGTAGTTCCAATGAATTTAAAACAAATCGACTAAATACTTCATAAAATTAAATTAGAAAGGACCTGTGATCCCCGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39522 lncRNA downstream 1625 15928443 ~ 15928750 (-) True G34814
TU39519 lncRNA downstream 4114 15926010 ~ 15926261 (-) True G34811
TU39301 lncRNA downstream 19704 15906913 ~ 15910671 (-) True G34616
TU39509 lncRNA downstream 42962 15887137 ~ 15887413 (-) True G34801
TU39316 lncRNA downstream 43921 15885237 ~ 15886454 (-) True G34631
TU39538 lncRNA upstream 54155 15998819 ~ 15999147 (-) True G34830
TU39544 lncRNA upstream 74894 16019558 ~ 16023123 (-) True G34836
TU39545 lncRNA upstream 78580 16023244 ~ 16024781 (-) True G34837
TU39324 lncRNA upstream 178896 16123560 ~ 16136696 (-) True G34639
TU39564 lncRNA upstream 201746 16146748 ~ 16147718 (-) True G34854
CI01000004_15922924_15923872.mRNA mRNA downstream 6503 15922726 ~ 15923872 (-) True CI01000004_15922924_15923872
CI01000004_15911104_15915972.mRNA mRNA downstream 14356 15910936 ~ 15916019 (-) True CI01000004_15911104_15915972
CI01000004_15881212_15881809.mRNA mRNA downstream 46683 15880863 ~ 15883692 (-) False CI01000004_15881212_15881809
CI01000004_15836936_15841048.mRNA mRNA downstream 89327 15836462 ~ 15841048 (-) False CI01000004_15836936_15841048
CI01000004_15832789_15836192.mRNA mRNA downstream 94171 15832584 ~ 15836204 (-) False CI01000004_15832789_15836192
CI01000004_15956601_15962195.mRNA mRNA upstream 11336 15956000 ~ 15962930 (-) True CI01000004_15956601_15962195
CI01000004_15965178_15990162.mRNA mRNA upstream 20456 15965120 ~ 15990175 (-) True CI01000004_15965178_15990162
CI01000004_15991836_15995032.mRNA mRNA upstream 46976 15991640 ~ 15995184 (-) True CI01000004_15991836_15995032
CI01000004_15999644_16005705.mRNA mRNA upstream 54831 15999495 ~ 16006425 (-) True CI01000004_15999644_16005705
CI01000004_16079875_16086958.mRNA mRNA upstream 135211 16079875 ~ 16087211 (-) True CI01000004_16079875_16086958
TU39503 other downstream 66627 15860613 ~ 15863748 (-) True G34796
TU39241 other downstream 94144 15833158 ~ 15833275 (-) True G34569
TU39318 other downstream 142478 15787386 ~ 15787897 (-) True G34633
TU39411 other downstream 648726 15281016 ~ 15281649 (-) True G34718
TU39323 other downstream 840017 15087179 ~ 15090358 (-) True G34638
TU39656 other upstream 457081 16401745 ~ 16421506 (-) True G34934
TU39713 other upstream 558061 16502725 ~ 16515974 (-) True G34982
TU39734 other upstream 584778 16529442 ~ 16533008 (-) False G34995
TU39739 other upstream 592531 16537195 ~ 16541278 (-) True G34999
TU39636 other upstream 634003 16578667 ~ 16617614 (-) True G34916

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00031344 True 2979 mRNA 0.42 11 NC_007113.7 38039857 ~ 38054482 (+)