RNA id: TU39892


Basic Information

Item Value
RNA id TU39892
length 1089
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G35125
representative False

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 17051549 ~ 17052637 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCATCATCCTTCTAAATTTCAGTTGTGAAATATTCTTCTCAGGGTGAACATCAGGGTTTATAGTGATGATCAGGATCAGTAAGTACACTTAGTGACTGCTTATTGAGCATCTTCCTACTTGCTGGTTGCTCAGTTTCTGAACTGCTTATGGGTTTCAACGAAGCAGGGTGTGTGATGTCATGGGGTGTTAGTTAAAAAGCACTGCTGAACAGAAAACCCTTTTAGTGAATGAGAAACCATATGCCCCTGTAAGCAACTTTCTTGTGTCAGTTTGATTGTCTGATGCAATAAATGATGACTTTCTTTAAATAAATTATTTAGCTCACATGAATGTCCAATTTGGAGAATGGTTTGATGATCAGAGATGCGGTCACTCCAATACATTTGTTCCAGGGCATGCTATAAATTTCCTCCTGATATTTCCACACAGAGTTCAAACAGAAACCCTTGAGGAGTCTGTATGCAGTTTCATGTTCTCAAAGAGCAAAAGAAGCCCGGGCTGAGCTACAGAGATGGAGCGTTACATCATTGTCGCATAATTTAGAGGATCAAACACTTGCAAATCTACAAGTGATCAGAGAGCATTCTTTAGACCCCTGCAGCAGTGTTCTTCTCTCACTTCTGTACCCTGAAACCACTGACTTCACATCTTCTTAGATTTTGACATGGTTCATGATTTTGTCTTTAATTATGTTATATCTTTTATTTTGAAGTCCATTCTTGTACATAGTCTTAGTTTCCTGCACCTCATGTCCCTTTTTTCTGCCTTGATTTATCGCAGATGTTAATGATTCACTAATTAGTTCAGGTGTATTTATAGCCATGTTTCCATAATATGTAACAAATATCCACCGCAGGTAAGTTGAAGTGAACCTACAATACCAGTCAAAAGTTTCCTGTCAGCTGTATCATGAAATAGTTCATCACTCTAAGCTTTTTAGTACAACACTGACGACATCTTGTGGTCAAAAAGTGGACAAGCAGCCTTTATGTCCCAGAGGTCCCTGACATTTTTGATTGTTTCATATAATAAATCAGTCACTTTGTACTCAGAGACCATAAAGGCAATAAAAAGTGTCAGTGTTGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39891 lncRNA downstream 309 17050998 ~ 17051240 (-) True G35124
TU39855 lncRNA downstream 26397 17013440 ~ 17025152 (-) True G35089
TU39836 lncRNA downstream 38424 16974249 ~ 17013125 (-) False CI01000004_16972324_17046706
TU39851 lncRNA downstream 38424 16999442 ~ 17013125 (-) True CI01000004_16972324_17046706
TU39884 lncRNA downstream 158986 16891334 ~ 16892563 (-) True G35117
TU39900 lncRNA upstream 359 17052996 ~ 17093838 (-) True G35129
TU39952 lncRNA upstream 86798 17139435 ~ 17139640 (-) True G35180
TU40110 lncRNA upstream 193599 17246236 ~ 17246673 (-) True G35314
TU40117 lncRNA upstream 201155 17253792 ~ 17254000 (-) True G35321
TU40136 lncRNA upstream 249615 17302252 ~ 17302565 (-) True G35340
CI01000004_16972324_17046706.mRNA mRNA downstream 4843 16972247 ~ 17046706 (-) False CI01000004_16972324_17046706
CI01000004_16960069_16965947.mRNA mRNA downstream 85255 16959399 ~ 16966294 (-) True CI01000004_16960069_16965947
CI01000004_16954912_16955958.mRNA mRNA downstream 95281 16954807 ~ 16956268 (-) True CI01000004_16954912_16955958
CI01000004_16951444_16952520.mRNA mRNA downstream 98804 16951103 ~ 16952745 (-) True CI01000004_16951444_16952520
CI01000004_16676283_16687164.mRNA mRNA downstream 363859 16675987 ~ 16687690 (-) True CI01000004_16676283_16687164
CI01000004_17122103_17127335.mRNA mRNA upstream 69023 17121660 ~ 17127335 (-) True CI01000004_17122103_17127335
CI01000004_17265394_17279344.mRNA mRNA upstream 212583 17265220 ~ 17281002 (-) True CI01000004_17265394_17279344
CI01000004_17292926_17304823.mRNA mRNA upstream 238449 17291086 ~ 17304823 (-) True CI01000004_17292926_17304823
CI01000004_17313828_17315129.mRNA mRNA upstream 261034 17313671 ~ 17315727 (-) False CI01000004_17313828_17315129
CI01000004_17329122_17345386.mRNA mRNA upstream 275529 17328166 ~ 17345386 (-) True CI01000004_17329122_17345386
TU39797 other downstream 156456 16695771 ~ 16895093 (-) True G35053
TU39636 other downstream 433935 16578667 ~ 16617614 (-) True G34916
TU39739 other downstream 510271 16537195 ~ 16541278 (-) True G34999
TU39734 other downstream 518541 16529442 ~ 16533008 (-) False G34995
TU39713 other downstream 535575 16502725 ~ 16515974 (-) True G34982
TU39908 other upstream 7585 17060222 ~ 17060790 (-) True G35137
TU40092 other upstream 260376 17315794 ~ 17315882 (-) True G35301

Expression Profile