RNA id: TU43548


Basic Information

Item Value
RNA id TU43548
length 5695
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G38421
representative True

Chromosome Information

Item Value
chromosome id CI01000005
NCBI id null
chromosome length 7630583
location 4209148 ~ 4215199 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACAGATGAGTGGTACGGCGCCAGAGAGCTCACTCCGCTTTCTGCTGACTGCAGCGATTACAGACACCCCTGCCTGAGTGAAATCACAGGTGTGTAGCCGTCTTACTCTCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGCGCGTGAAGGGGGTGTAATGTTAGTGGTGTTTACCATGGTATATAATGACTGCACAATTAATTCTTTGAGATCATCACCGTAAACATTTTGTGATAAATATTTGGAGCAAAAATATATTGTACTCAGAGACCAAAGTTGACCAAAGAGTAAAACACTAGAACTAGATCATTCAAAATGTTCTGCCATACTGATAAAAATCTGGTCATATGTCTGGTCTATGGATGGATGGATGGATGGATGGAATGAACAACAGATAAAAGGATGGATGGATGGAGTATAAACGGATGGATGGATGGATGGATGAAGTATAAGCGGATGGATGGGTGGATGGATGGAACTAACAACAGATAAAAGGATGGATGGATGGAACAACAGATAAAGATTAACAATAGATAAAAGGATGGATGGATGGATGGATGGATGGATGGAGTATAAACGGATGGACGGATGGATGGATGATGGATGGATGGAACGAACAGATAAAAGGATGGATGGATGGATGGAACGAACAACAGATAAAAGGATGGATGGATGGATGGAACAACAGATAAAAGGATGGATGGATGGATGATGGATGGATGGATGGAGTATAAACAGATGGATGGATGGATGGATGGATTGGTGGAATGAACAACAGATAAAAGTGTGGAATGGATGGATGGATGGATGGATGGATGAATGGATGGAGTATACATTTTCTAACAGTCACTTGTCACCACCTAAAAAAAAAGTAAATTCAAGTGTTTGGGATGATAATGCTACTTTCATATGTGCACACTGTCTTATTAGCATCATTGCTTAAATTGGGGTGAAAGGGGTTCCTTCCTGGGATGGTTTGGTCCAAAAATATATTTGTAGTAGCGAAGAAAATATTGACAGCTTCAATCTGCTGCAGTCTTTCTGCCCATGAAAGTCACTCCTCACCTGCTAGAAGCCAAATGTTGGATGAATGCTAATATTAATATCGCTGTAAACTGAGGTCAACGGCATGAAATCAAAGCAATATGGAAGTATGTGATGAACGAACCTTCTTTCTAGTTCATGAGAGAGTTAATCATCTACTACAGCTGAGGGTAATAAAAACCATTCCCATGTACCAATACTGATGAACAGTTTCACCATCTCTTTCTCACAGACTCACATACAGTCCTCTCTGTGCCTGTGTACATGCTTGAACACACATTAAATGAAATAAACGCACAGTATTGGTGCCCAAGCAGTGCATACATAAACAGTTCATATAGCCTGCACTAATGCAAGTCATATCATCAGTTCAATAATTGCAGATGGATCGTGTGTGCAGTAACTGAACTCGACTGTACATTGATCCGGGTAAAATTACACGCAGGACCATTTTGAAACTGGCAAGACTATGATGACTGATAAGGAAACATGTCCAAACACCACAGCAACTAGGACTGTAACTAATGATTATTTTGACGATCGATCAATCTTTTTTTTTTTTAGTCGATTAATCTAACAATTATTTATTAATCCAGTCGATTAACCCTTTAGTTAACCTACCAATAAATGACTGTAACTTCTGCCATTAATCTTTCAAGTTTTTTTGCGAACATTTTTCTCAGAGAATACTTACTTTCCAACATAAAAAAGAAAGTTCCAAGAATTAAAAGGCATCTATTAGTCATACAAATGTCCATGATGGCTGCATTCACAGTCACTGTTTGGGGTTGACAGCATTTGCTTACAGGGTCCAATCGAGGGGTGAGTTTATCCATCAGATATTTTAAATAACCAACAATGACTTCAAAATGCTTTGTAACTGAGTGCTTTTGAGCCACGTGCCTCACAGCTCGCACCCACTGCAGCTCCGGCGGATCTGTGGATAAACGCAAATCATTTCACCGTCACGGTCTGAGTAAACTAAGCTCATCATGATTATACAGTTCAGAGTGGTTCTCACATTATATGACGTGGCAGACAACTAGTTGTCCAGTGCGGTTCCATAAACTGTTCATAAAGCTGTTCTGATGTAAATGTTGAAAATGTCTGTAATTTACCTGCTCCCTACCACATGTTAATGGTGCGTAAAACATTGGAAAGTTTTGTGTTCTTTTAGGCAAACTGATAACTGCATTTTGATGCACATTATACCATAATAATATTTCACAAGTTAGTTTACCCTGTGGGTTATTTTTATTTTTTTATTTATTTTTTTTGAGCTGAGAGTTGAAAACTGTTCAACTCTGGATCAAACATAGTGCTTCGTCACTTTTCACCTAGCCGTCCGATCACAGTAGAGAAGGGGCGGGACAAATACTACACCTACCAACCATCCTACTTGTGCAATGACTAAACAGGGCCATAACCACCACAGACAATAATTAGAAATGACCAAATTATCCCCCCCAATATTTTGTATAGGCTAAATATTGCCAAGGGACAATATTTTATATTATCCCCTCTGTTTGTTGTTGGGATGACAAAAAAAAGTTTTGATCTGCCTCAGCGGCCTAACGGCACTCATCACTGTCAGAATGAGTGAGCTGGCCAATCAAATCAAAGAAGGCGGGGCTTATTGTTCACAGAAGACGAGTGCGAATTCCAATGCGACGCTTTCGTTTTAGCAGTGAAAGAGTTTGTTGCTAGTAAGTAGCTAAACATTTAATATTTGACCACTGTTTAATGATTGAAATATTCAGCAACCGACAATAATGTCCAGTGACGCAAACTACTCAACATTTTTATGAAATTTCACCATTTTGAATTGAAAAACATGCTTTTATTTGATTAATATGATTCTTGTAATTCATAACTGAATGTGATGAGACAAGAAAAAGTTTGCGTTTTTGACATATTAGACATACACACAAGAGTGAATATATATATTTAAAAATAAATAAATAAATTAGGCCTATTTTCAAATAGTTTAAATTGATTACTTAATAACTACAATAGACATGGAACTCGTTTAGCGTTCTTATTTATTTTTCATTATTCCCTTAAATCCCTTTTAATCTTTTTTAAATTCCTTTTATTTAAAAAAAAAAAAAAAAAATGATCACAGTAATGATTCGAATTCATTAACATACACGTTTAACTATCAAATCTGATGTTTACGAAGTGTTCAGGAAGGTCCATTTTACGCGCAAATGACGAATTTACTCCTATATTCACGAAAGTTTCACGAATCAGCACACGAATACTGAAGTTCTGAACATGTGTAGGTGTCAGTTTGATTATAGATTATAGAGTGCTTGTCATGCTCGTAAAAATCAAAATACTGTACAGTATTAGACAGCTTTGTCATACTAGGCATTAGGATCTGCTCTAGTGAGTCTTGTTTTGTGTGAATCATGACAGGGGATTAGGGATGAACGTAAGCAGTGTGACATGACAATGCATTCCATGCAAATTAACGGATTATCGTAATCAATGTAATTCAGCGTCATTCCAGCCCTAACAGCAACTCATTAACAATCAATCCGAACACCTAAATGATCATATAGCAACACCCTGGTAACGACCTACAACAAAGGTCAGTATGAATCCAATCTGCTCGAAAGGTGCGGTCAAATGTCTGCGTGCAAAGTCCAGTCATTTCAATAGGAATCCATCAGGTATTTAGCATGAGGGCGAAAATTTCCCTACACAGATTTCATAATGGGTTCAAGTTGGTCACATGGATTCACTGCATTGTCCAATAGAAAGCTGCTAGGTTTGAAAGTGACTTCTGTGTGAGCTGTGCATCATACATCACTACACTTTTGACAATGGATCTTTTTGCCTGCAAAATTGCGCTAATGTGACCGCACATTAAAAAGTATTATTTGAATCTTTGCTCATGCCCAGTCACACTTATATGAATAAATTGTCATCGGAGAGCAGCACGATGTCCTCTGTGTCGATCTGTGCGTGTCAAGTTTTGACTTTAAAGCCAACTTGAGGACTGAAATCAAAGGAAGCACGTAGGCTGAGTGCTGCAGGGCTGCTGGAGAATTTAACCTGCAAACCTGACACTTACTGACAAGCTGACACTCGTCTGACTGGAGAACTGCTGTCAGTAATTTCTCACTCAGTCTCTGCCAGTTCTCCTTTTCTCTTTCCCAGATGGTATCATGGATTTAATCCTTTCGCTATCTTTGAGAAGAATGTCTTTATATAACAAAGAGCTGGGAGATTCACAAAATATTCACAATGATTTGACCCATATACAATATCTGCATTTACACTATAATCTTGGCGAAAGAACCCAAGGTAGATGTACTGACCCGGAAAAGCTTAGAAAAATGGTCGCAATTTGCAATGGACGCAACAAAATGAAGCTTTTGCTTTCCGCATCATCTTTAAAGGTCAGCAAACCATTGGGTGGGCCTTTGTCCTCCATTGCACCATTGAAAAGAGTCATGTGATCATGGTTAGTGTCCACCTAAATTGACGCCATTTGCCGTCGCTTTTTCAATAGGGGTGTAAGAAAATATCGATACACGTGAATATCGCGATATTATGTTTGGCGATACTGTATCGATTCTCAAAAACACTGTATCGATATTTATTTGATTATTTATTTACATCCAATATTCGTGGCTTTGTGTTCGGTTTAAACCATAGACTGTATAAAACCCAACCGCTAGATGTCAGCGTTATTTCAGAACGTAAACTGACGCGTAGCCGGAGAAGCGCAAGGTGCATAGCTAGCGTTAGCATTAGCAAACCCAGCTCACAACACGATAGAATTATTCCGCTCCCGCGGCATACAGAGCTGAAGTGTGGACTCATTTTGGCTTCAACTATAAAGAAACCACTAAGGAGATCGACAAGAGTCAGTTGTTTGCAAAACAGGCCATGTTATAATCCAAAACTCGGGAAACGCATTGAATCTAAGAGCTCACTTAATATCCCGACACCATCCGCGCTGCTGAGAGAGGTGTTCGATAGAATATGTAATATGTACTGCACATTTCCTTTCAGTAACAAAATAAACACACAACAAAAAAGCGGTGACAGCAGAAAGAAAGCATCTGATCATAGCGATGTGGATATGTTTGCACCAGCTCTGTTCAGCACTCCAGTGAAGGCACGTTTATTTAAACAGCACTTCATACAATAGACTGCTTTATAGCATGCAGCTTTACAGTATTAAATATAAAACAAACAGACATTCATGAAATGGACTATTCACTAGTTGTTAAAACGTTTAGAAATTAAAAACTGCTATACTGTGAACCTTTAAAACATACATCTAAAGAATCCTGCAGTCACTTTAGACTGCACAAAATAGTGATTAGGGATATAAATATAAATGCAAATGATACTTTATTGATTAAATAAAAAGGTTGTTTTCAGGTTTTATGCATATGGTGGTGTTCTTTATGAACGTTTTTTGTAAAATTAGACCCTCTTTCTAAAAAAACAAGAAATATCACAATATATCGCCTTTCTTACAGTATCGCAATATATCACAATATATCGTATCATGTCCCCTGTATCGTGATACGTATCATATCGCCAGATTCTTGGCTATACACAGCCCTATTTTTCAATGACGTACGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43638 lncRNA downstream 28 4206319 ~ 4209120 (-) True G38511
TU43635 lncRNA downstream 4533 4204247 ~ 4204615 (-) True G38508
TU43636 lncRNA downstream 5018 4203859 ~ 4204130 (-) True G38509
TU43540 lncRNA downstream 14163 4191510 ~ 4194985 (-) True G38413
TU43538 lncRNA downstream 18443 4190451 ~ 4190705 (-) True G38411
TU43639 lncRNA upstream 73 4215272 ~ 4215538 (-) True G38512
TU43644 lncRNA upstream 11527 4226726 ~ 4228565 (-) True G38517
TU43534 lncRNA upstream 81010 4296209 ~ 4299810 (-) True CI01000005_04296779_04299727
TU43657 lncRNA upstream 93762 4308961 ~ 4309174 (-) True G38530
TU43664 lncRNA upstream 151317 4366516 ~ 4368007 (-) True G38537
CI01000005_04161239_04162612.mRNA mRNA downstream 45902 4160972 ~ 4163246 (-) True CI01000005_04161239_04162612
CI01000005_03986570_03989555.mRNA mRNA downstream 219593 3986099 ~ 3989555 (-) True CI01000005_03986570_03989555
CI01000005_03714714_03715575.mRNA mRNA downstream 493507 3714273 ~ 3715641 (-) True CI01000005_03714714_03715575
CI01000005_03530548_03573901.mRNA mRNA downstream 634367 3530249 ~ 3574781 (-) True CI01000005_03530548_03573901
CI01000005_03494256_03497235.mRNA mRNA downstream 710131 3494077 ~ 3499017 (-) True CI01000005_03494256_03497235
CI01000005_04296779_04299727.mRNA mRNA upstream 81439 4296638 ~ 4299785 (-) False CI01000005_04296779_04299727
CI01000005_04332499_04357527.mRNA mRNA upstream 117291 4332490 ~ 4358857 (-) True CI01000005_04332499_04357527
CI01000005_04401277_04428207.mRNA mRNA upstream 186049 4401248 ~ 4428207 (-) True CI01000005_04401277_04428207
CI01000005_04443111_04445092.mRNA mRNA upstream 227854 4443053 ~ 4445092 (-) True CI01000005_04443111_04445092
CI01000005_04624198_04638644.mRNA mRNA upstream 408797 4623996 ~ 4638644 (-) True CI01000005_04624198_04638644
TU43637 other downstream 2940 4204845 ~ 4206208 (-) True G38510
TU41481 other downstream 2319872 1883254 ~ 1889276 (-) False CI01000005_01883894_01899867
TU41482 other downstream 2319872 1883254 ~ 1889276 (-) True CI01000005_01883894_01899867
TU41598 other downstream 2544869 1663267 ~ 1664279 (-) False G36628
TU43542 other upstream 166039 4381238 ~ 4401110 (-) True G38415
TU44762 other upstream 1618593 5833792 ~ 5834392 (-) False G39515
TU44763 other upstream 1618593 5833792 ~ 5834539 (-) True G39515
TU45564 other upstream 2265490 6480689 ~ 6483489 (-) True G40190
TU45920 other upstream 2980596 7195795 ~ 7196428 (-) True G40487

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU71720 False 2914 lncRNA 0.39 1 NC_048565.1 58166834 ~ 58169747 (-)
eurasian perch (Perca fluviatilis) TU68785 True 429 lncRNA 0.36 1 NC_053116.1 20063108 ~ 20063536 (-)
mexican tetra (Astyanax mexicanus) TU71720 True 7382 lncRNA 0.44 2 NC_035902.1 18778714 ~ 18786708 (-)