RNA id: TU47456


Basic Information

Item Value
RNA id TU47456
length 226
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G41810
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 4188320 ~ 4188545 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGGCCGGACACATCCACCGTGCGCAAAGGCAGTTCTAAACCATACTTTTCCGGACCCATTATCGTTTATTATAGTATCAAGGCATTTTACGCTGACGTTCCCGCAAAACTACTGCCGTTTGCGTTCCCACGGACAGCCCAGGCGAACAGCTAGAAGTACGGGCTTGCAGCCTCCCGTCCCCTCGCCTCTGGAGACTGGAGTGACAAGCCATAACTCACACGGGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47454 lncRNA upstream 5005 4183075 ~ 4183315 (+) True G41808
TU47453 lncRNA upstream 9068 4179000 ~ 4179252 (+) True G41807
TU47452 lncRNA upstream 15699 4172349 ~ 4172621 (+) True G41806
TU47450 lncRNA upstream 27955 4160081 ~ 4160365 (+) True G41804
TU47413 lncRNA upstream 43696 4142087 ~ 4144624 (+) True G41767
TU47423 lncRNA downstream 649 4189194 ~ 4189818 (+) True G41777
TU47470 lncRNA downstream 39889 4228434 ~ 4228792 (+) True G41822
TU47471 lncRNA downstream 40292 4228837 ~ 4229231 (+) True G41823
TU47492 lncRNA downstream 52977 4241522 ~ 4256763 (+) True G41835
TU47546 lncRNA downstream 137027 4325572 ~ 4325809 (+) True G41860
CI01000006_04145907_04147044.mRNA mRNA upstream 39146 4145414 ~ 4149174 (+) True CI01000006_04145907_04147044
CI01000006_04124413_04127728.mRNA mRNA upstream 60549 4124413 ~ 4127771 (+) True CI01000006_04124413_04127728
CI01000006_04107814_04117460.mRNA mRNA upstream 70658 4107814 ~ 4117662 (+) True CI01000006_04107814_04117460
CI01000006_04100433_04105606.mRNA mRNA upstream 82703 4100062 ~ 4105617 (+) True CI01000006_04100433_04105606
CI01000006_04050327_04089669.mRNA mRNA upstream 96997 4050019 ~ 4091323 (+) False CI01000006_04050327_04089669
CI01000006_04240020_04242545.mRNA mRNA downstream 51475 4240020 ~ 4242978 (+) True CI01000006_04240020_04242545
CI01000006_04257954_04258376.mRNA mRNA downstream 68278 4256823 ~ 4258506 (+) True CI01000006_04257954_04258376
CI01000006_04268235_04268891.mRNA mRNA downstream 77091 4265636 ~ 4269257 (+) True CI01000006_04268235_04268891
CI01000006_04272263_04272907.mRNA mRNA downstream 83576 4272121 ~ 4273578 (+) True CI01000006_04272263_04272907
CI01000006_04284763_04290722.mRNA mRNA downstream 95791 4284336 ~ 4291717 (+) True CI01000006_04284763_04290722
TU47110 other upstream 452342 3734098 ~ 3734202 (+) True G41496
TU47107 other upstream 452435 3734098 ~ 3734202 (+) False G41496
TU47109 other upstream 452495 3729230 ~ 3734202 (+) False G41496
TU47105 other upstream 452495 3734098 ~ 3734202 (+) False G41496
TU47211 other upstream 1348899 2836167 ~ 2839421 (+) True G41591
TU47686 other downstream 928661 5117206 ~ 5124149 (+) True G41996
TU49835 other downstream 1581544 5770089 ~ 5771775 (+) True G43896
TU49806 other downstream 1919939 6108484 ~ 6108637 (+) True G43869
TU49812 other downstream 1933490 6128606 ~ 6128675 (+) True G43873
TU50906 other downstream 2978244 7169829 ~ 7170534 (+) True G44782

Expression Profile