RNA id: TU52890


Basic Information

Item Value
RNA id TU52890
length 432
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G46519
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 9536933 ~ 9537485 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACACACCTGTCTATATAAGACCTTTCAGCTCACAGTGCATGTCAGAGCAAATGAGAATCATGAGGTCAAAGGAACTGCCTGAAGAGCTCAGAGACAGAATTGTGGCAAGGCACAGATCTGGCCAAGGTTACAAAAAAAGAGAAGAGCCTTGGTGAGAGAAGTAAAGAAGAACCCAAAGATCACTGTGGCTGAGCTCCAGAGATGCAGTCGGGAGATGGGAGAAAGTTGTAGAAAGTCAACCATCACTGCAGTCCTCCACCAGTCGGGGCTTTATGGCAGAGTGGCCCGACGGAAGCCTTTCCTCAGTGCAAGACACATGAAAAAACACCTGAAGGACTACAAGATGGTGAGAAATAAGATTCTCTGGTCTGATGAGACCAAGATAGAACTTTTTGGCCTTAATTCTAAGCGGTATGTGTGGAGAAAANNNN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52873 lncRNA upstream 26264 9510424 ~ 9510669 (+) True G46507
TU52849 lncRNA upstream 52117 9470382 ~ 9484816 (+) True G46483
TU52836 lncRNA upstream 90256 9446445 ~ 9446677 (+) True G46470
TU52746 lncRNA upstream 120644 9416020 ~ 9416289 (+) True G46383
TU52734 lncRNA upstream 158599 9378059 ~ 9378334 (+) True G46371
TU52907 lncRNA downstream 8377 9545862 ~ 9546073 (+) True G46530
TU52902 lncRNA downstream 37830 9575315 ~ 9587799 (+) True G46525
TU52901 lncRNA downstream 58169 9595654 ~ 9602520 (+) True G46524
TU52918 lncRNA downstream 116821 9654306 ~ 9655184 (+) True G46541
TU52900 lncRNA downstream 280559 9818044 ~ 9850524 (+) True G46523
CI01000006_09497508_09511925.mRNA mRNA upstream 24213 9496806 ~ 9512720 (+) True CI01000006_09497508_09511925
CI01000006_09334843_09337295.mRNA mRNA upstream 199530 9334801 ~ 9337403 (+) True CI01000006_09334843_09337295
CI01000006_09320331_09321778.mRNA mRNA upstream 215155 9320331 ~ 9321778 (+) True CI01000006_09320331_09321778
CI01000006_09192219_09195918.mRNA mRNA upstream 340949 9191897 ~ 9195984 (+) True CI01000006_09192219_09195918
CI01000006_09107491_09114820.mRNA mRNA upstream 421862 9106826 ~ 9115071 (+) True CI01000006_09107491_09114820
CI01000006_09569228_09574340.mRNA mRNA downstream 30795 9568280 ~ 9575061 (+) True CI01000006_09569228_09574340
CI01000006_09712289_09783579.mRNA mRNA downstream 174804 9712289 ~ 9783579 (+) True CI01000006_09712289_09783579
CI01000006_09836923_09844045.mRNA mRNA downstream 299438 9836923 ~ 9844348 (+) False CI01000006_09836923_09844045
CI01000006_09884959_09889794.mRNA mRNA downstream 346954 9884439 ~ 9890289 (+) True CI01000006_09884959_09889794
CI01000006_09891107_09897750.mRNA mRNA downstream 353622 9891107 ~ 9897763 (+) True CI01000006_09891107_09897750
TU51632 other upstream 702236 8818814 ~ 8834697 (+) True G45416
TU51562 other upstream 1324545 8209555 ~ 8212388 (+) True G45355
TU51557 other upstream 1336788 8198844 ~ 8198909 (+) True G45351
TU51555 other upstream 1337231 8197881 ~ 8199702 (+) False CI01000006_08198328_08199463
TU53040 other downstream 619094 10156579 ~ 10159251 (+) False G46652
TU53607 other downstream 947873 10485358 ~ 10511806 (+) True G47145
TU53635 other downstream 1878744 11416229 ~ 11416560 (+) False G47159
TU53639 other downstream 1878744 11416229 ~ 11521703 (+) True G47159
TU53826 other downstream 2086782 11624267 ~ 11638252 (+) True G47318

Expression Profile