RNA id: TU71696


Basic Information

Item Value
RNA id TU71696
length 222
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G62947
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 4326489 ~ 4326710 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGGATTCCCCATACAAATAATGATAAAACTGTAAGTAGCTTTGGTTAAAAGTGTCTGCTAACTAAGTGTCTCTTTACTGTGCTGCTTTCACACTGTTAACCACAACTAGCTTTACAATTCTTGTTTATTATGAATGTTTGTCATTGTAATACTAATATTGCTGTTTTCTTTGCAAGTGATGTTTTATGTTTTTCCTCAATTGTAAGCCACCTTGATTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71683 lncRNA upstream 137 4306921 ~ 4326352 (+) True G62934
TU71679 lncRNA upstream 21224 4305065 ~ 4305265 (+) True G62930
TU71675 lncRNA upstream 26567 4299693 ~ 4299922 (+) True G62926
TU71674 lncRNA upstream 28862 4297361 ~ 4297627 (+) True G62925
TU71672 lncRNA upstream 35178 4291085 ~ 4291311 (+) True G62923
TU71697 lncRNA downstream 3048 4329758 ~ 4329998 (+) True G62948
TU71735 lncRNA downstream 68270 4394980 ~ 4482134 (+) True G62980
TU71737 lncRNA downstream 118806 4445516 ~ 4447186 (+) True G62982
TU71764 lncRNA downstream 148961 4475671 ~ 4480575 (+) True G63006
TU71810 lncRNA downstream 217512 4544222 ~ 4544452 (+) True G63052
CI01000010_04165584_04232583.mRNA mRNA upstream 93906 4165584 ~ 4232583 (+) True CI01000010_04165584_04232583
CI01000010_04046204_04137642.mRNA mRNA upstream 188847 4046204 ~ 4137642 (+) True CI01000010_04046204_04137642
CI01000010_04025764_04026729.mRNA mRNA upstream 299223 4025361 ~ 4027266 (+) True CI01000010_04025764_04026729
CI01000010_04010515_04020837.mRNA mRNA upstream 305591 4010515 ~ 4020898 (+) True CI01000010_04010515_04020837
CI01000010_03952874_03957173.mRNA mRNA upstream 369245 3952874 ~ 3957244 (+) True CI01000010_03952874_03957173
CI01000010_04368541_04374080.mRNA mRNA downstream 41761 4368471 ~ 4374174 (+) True CI01000010_04368541_04374080
CI01000010_04377762_04378990.mRNA mRNA downstream 50437 4377147 ~ 4379082 (+) True CI01000010_04377762_04378990
CI01000010_04437892_04443935.mRNA mRNA downstream 110719 4437429 ~ 4444446 (+) True CI01000010_04437892_04443935
CI01000010_04534309_04549864.mRNA mRNA downstream 207468 4534178 ~ 4549959 (+) True CI01000010_04534309_04549864
CI01000010_04609294_04611679.mRNA mRNA downstream 282479 4609189 ~ 4611710 (+) True CI01000010_04609294_04611679
TU71580 other upstream 386544 3937757 ~ 3939945 (+) True G62856
TU71560 other upstream 432696 3890095 ~ 3893793 (+) True G62838
TU70047 other upstream 995303 3328458 ~ 3331186 (+) True G61480
TU70029 other upstream 1126581 3194155 ~ 3199031 (+) True G61462
TU69273 other upstream 3378945 946794 ~ 946871 (+) True G60842
TU71738 other downstream 121462 4448172 ~ 4449327 (+) True G62983
TU71841 other downstream 314131 4640841 ~ 4653993 (+) False CI01000010_04640858_04683752
TU71842 other downstream 314131 4640841 ~ 4651767 (+) True CI01000010_04640858_04683752
TU72215 other downstream 1368735 5695445 ~ 5707085 (+) False G63403
TU72214 other downstream 1370713 5697423 ~ 5699465 (+) False G63403

Expression Profile